Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1355 ATGGTGGTAAGATCATGCTCGAATTTATCTGACTTGGTGTCCGAGGACATTTCAAATTCCCCTCAATCTCCTGGAGCTCTTCCCCAACCCCTGTCTGTTCCAGGAATTATGTCTGATGTGGATGGCAAACTAGGAGACAAAGATGATTCAAATGCTTTCTCATCAGAGTTCCAGCTGAAGATCATTATAGTAGCAAATTTTCTTCCTCTCAATGctcaaaaggataaaatatcTGGCAGATGGTGCTTCACTTATGATGAAGATTCAATCTTGTTGCCATTAAAGGATGGTCTTTCTTCTGACACTGAGGTCTTTTATGTGGGATCTTTGAAGGTTGATGTTGATGCTAGTGAACAAGAGAATGTTTCTCTTCGGATACTGGAGGAATTCAATTGCTTGCCTACCTTTATTCCTTCAGACATCcagaaacaattttataatggATTCTGCAAGCACCATTTGTGGCCTCTACTCCATTACATGTTGCCCTTGTATCCAGAGTACTGCAATCACTTTGACAGGTCACTGTGGCAGGCTTATGTTTCTGCTAACAAAATATTTGCTGATAAAGTCATGGAGGTTATTAATCCCGAGCGTGATTATGTATGGGTTCATGATTATCATCTTATGGTTATTGCAACATTTCTACGGAAGCAGTACAATTGGATCAAGCTAGGATTTTTCCTCCACAGTCCATTTCCTTCATCGGAAATTTATCGGGCTTTACCTGTCAGGgatgaaattttgaaagcaCTGCTTAATGCAGATTTAATTGGTTTTCATACATTTGATTATGCTCGCCACTTTCTTTCTTGCTGCAGTCGAATTCTTGGCTTAAAATATGAATCCAAAAGGGGTTACATCAAGCTCGAATACTTTGGCCGTACAATAATCATTAAAATCTTGCCTGTGGGGATTCATATGGGTCGACTTCAATCTGCCTTGAGTCACCCTTCTTTTTCAGTCAATGTCAGAGAAATGTGGGAGAAGTTCAAGGGGAAAAAACTTATTCTTGGTGTTGATGATATGGACATTTTTAAAGGTATCAACCTAAAGCTCTTGGCCATAGAACAACTCCTTCAGCAATATCCTGAATTGCTGGGAGAATTAATACTGGTCCAGATTGTAAATCCACCGAGGAGTACTGGTAAGGATGTAGAGGAGGCAAGGAACCAGATGTACCTTACTGCCAACAGGATAAATGAAAGGTTTGGTTTGCCTGATTATGAACCTGTCATCATCATTAATCGTCATGTTCCTTTATATGAGAAGGCATCCTACTATGCTTTAGCAGAATGTTGCATTGTGAATGCGGTGCGGGATGGTATGAATTTGGTTCCTTACGAGTACATTGTCTGCAGGCAGGGGAGTCCTAAAATGGACGAAGCTTTAGACATTGGTTCTGAGTCCCCTCGTACAAGTGCGCTTGTTGTATCTGAGTTTGTAGGTTGCTCACCTTCTCTTAGTGGGGCAATCAGGGTAAACCCATGGGACATTAATGCTGTAGCTGATGCACTGAATTTGGCCATCACAATGCCCAGCGGAGAGAAACAGTTGCGGCATGAGAAGCACTATCGATATGTTAGCTCTCATGATGTGGCTTACTGGGCCAAAAGTTTTGTGCAGGATCTTGAGTATTCGTGCAAGGATCACTTTAGTAAAAATTGCTGGGGCGTTGGCTTTGGCCTTAATTTCAGAGTTTTGTCCCTTTCTCCTAGTTTCAGGAAGCTTAACAAAGGCCACGTTGTTTCTGCATATGAAAGGACAAATTGCAGGGCATTATTTTTGGATTATGATGGTACAGTTGTACCTCAAACTTCCGTTGTTAAAACTCCGAGTCCAGAAATCAAGGTTGTTCTAAATAACCTTTGCAGTGATCCTAAGAACACTGTGTTTATAGTAAGTGGCAGGGGGAAAACCACGCTGAGTGAATGGTTTGATGAGTGTGAGAATCTTGGTATAGCAGCTGAGCATGGTTATTTTCTAAAATGGAGTCAACAGTCAACTTGGGAAATGAATCATCAAAATGCAGATTTTTCCTGGAAAGAGATTGTTGAACCTGTGATGAGATTGTACACTGAAGCAACAGATGGCTCCCATATAGAGACCAAAGAGAGTGCCTTAGTATGGCACTACTATGATGCTGATCCTGATTTTGGATCTTGGCAAGCCAAGCAGCTGTTGGATCACCTTGAAAGTTTATTTGCAAATGAACCGTTAGTTGTAAAGAAGGGAAACCATATTATTGAAGTCAAGTCACAGGGGATTACTAAAGGGTTAGTTGTAAAGGACATTCTGTCTAAGATGACCGAGAATGGGAAATCGCCAGATTTTGTACTGTGCATAGGGGATGATAGATCGGACGAGGACATGTTTGAGAGCTTACTAACTAAAGCTTACAGTGGAACCTCTTCTTTTGCACCAGAAATCTTTTCATGCACTGTTGGTCAAAAACCAAGTAAAGCTAGGTACTATTTAGATGATACTGAGGATGTGATGAGGTTACTTCAAGCTCTTGTTGCTGTTTCAGGGCCTAAATCAACAAGTCCAGAAGAAGACTCTTCTGGAAAAACAGAAGGCTGTTTCGAGAATGTTTGA 2598 0.4045 MVVRSCSNLSDLVSEDISNSPQSPGALPQPLSVPGIMSDVDGKLGDKDDSNAFSSEFQLKIIIVANFLPLNAQKDKISGRWCFTYDEDSILLPLKDGLSSDTEVFYVGSLKVDVDASEQENVSLRILEEFNCLPTFIPSDIQKQFYNGFCKHHLWPLLHYMLPLYPEYCNHFDRSLWQAYVSANKIFADKVMEVINPERDYVWVHDYHLMVIATFLRKQYNWIKLGFFLHSPFPSSEIYRALPVRDEILKALLNADLIGFHTFDYARHFLSCCSRILGLKYESKRGYIKLEYFGRTIIIKILPVGIHMGRLQSALSHPSFSVNVREMWEKFKGKKLILGVDDMDIFKGINLKLLAIEQLLQQYPELLGELILVQIVNPPRSTGKDVEEARNQMYLTANRINERFGLPDYEPVIIINRHVPLYEKASYYALAECCIVNAVRDGMNLVPYEYIVCRQGSPKMDEALDIGSESPRTSALVVSEFVGCSPSLSGAIRVNPWDINAVADALNLAITMPSGEKQLRHEKHYRYVSSHDVAYWAKSFVQDLEYSCKDHFSKNCWGVGFGLNFRVLSLSPSFRKLNKGHVVSAYERTNCRALFLDYDGTVVPQTSVVKTPSPEIKVVLNNLCSDPKNTVFIVSGRGKTTLSEWFDECENLGIAAEHGYFLKWSQQSTWEMNHQNADFSWKEIVEPVMRLYTEATDGSHIETKESALVWHYYDADPDFGSWQAKQLLDHLESLFANEPLVVKKGNHIIEVKSQGITKGLVVKDILSKMTENGKSPDFVLCIGDDRSDEDMFESLLTKAYSGTSSFAPEIFSCTVGQKPSKARYYLDDTEDVMRLLQALVAVSGPKSTSPEEDSSGKTEGCFENV 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1355 865 Gene3D Glycogen Phosphorylase B; 313 529 - -
Ssu6g1355 865 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 594 794 IPR006379 -
Ssu6g1355 865 CDD GT20_TPS 60 545 IPR001830 GO:0003824|GO:0005992
Ssu6g1355 865 Gene3D Glycogen Phosphorylase B; 51 312 - -
Ssu6g1355 865 Pfam Glycosyltransferase family 20 60 545 IPR001830 GO:0003824|GO:0005992
Ssu6g1355 865 Gene3D - 722 853 IPR023214 -
Ssu6g1355 865 Gene3D - 591 708 IPR023214 -
Ssu6g1355 865 TIGRFAM T6PP: trehalose-phosphatase 592 840 IPR003337 GO:0003824|GO:0005992
Ssu6g1355 865 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)-RELATED 1 847 - -
Ssu6g1355 865 SUPERFAMILY HAD-like 592 840 IPR036412 -
Ssu6g1355 865 CDD HAD_TPP 593 834 - -
Ssu6g1355 865 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 847 IPR001830 GO:0003824|GO:0005992
Ssu6g1355 865 Pfam Trehalose-phosphatase 595 829 IPR003337 GO:0003824|GO:0005992
Ssu6g1355 865 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 548 - -
Ssu6g1355 865 MobiDBLite consensus disorder prediction 843 865 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1355 Ssu-Chr6 22114687 22117598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1355 1 865 Trehalose Biosynthesis Gene Families AT1G23870 64.434 0.0 1218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1355 K16055 - gmx:100808800 1563.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2207 1 62641824 62644895 Ssu6g1355 6 22114687 22117598 ECH
Ssu6g1355 6 22114687 22117598 Ssu6g1355 6 22114687 22117598 ECH
Ssu6g1355 6 22114687 22117598 Ssu1g2207 1 62641824 62644895 PCT