Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1351 ATGCGCAGCATTCAACTTGAAGTCAAGCAAGATGGAGGTTTGAAGTACTCATATCCTCAATCTCCTTTCTCAGCATTCCATACTCCTAACGATGGTAGCATTAGCAACGAGAAAGAAGCAACAACGCCAACATCTCTCAGCAGAATCAGTCCACTCATCTTGCTAGTTATAATAGTTCTAGCGGTGATCTTCTTCGTCTATGGACTCGTCCATTTGGTTCTATGGTTTTTCATGAAAAGGCCAACCCCTTCGTCTCTTTACAACTCCAACAGGTTCCCAGAATCCATTCGCACCAGTGCTCTTCAGAGACAGCTTCAACAACTCTTCCGCTTGCACGATTCAGGTTTAGACCAGGCCCTCATAGATGCTCTACCCGTTTTCCATTACCAAGACTTATTGGGGTCGAAGGAACCGTTTGACTGTGCCGTGTGTCTTTGCGGATTCTCGGAGGAGGACAAGCTGAGGTTGCTTCCTATGTGCACCCACGCCTTTCACATGAACTGCCTTGACACGTGGCTTCTCTCGAATTCCACGTGTCCTCTTTGCAGGGCTTCTCTCTCCAACTATGTGGAGAATCAGAATCCGATATTTAATGTCGACAACTCCTTGGCTCTGCCAAATTGGTTCGGAGGCGAGGAAGAGAACGGGTGTTCAGATGGTCAAAGGTCAGTAACCGCTGAGGCACAAATCGGTGGGAAGAGGGTGTTTTCTGTGAGGCTTGGAAAATTCAGAAATAATGGGTTGGAGGGTGGAGAGGTAGGGGATAGTAGTTGTAGCTTGAATGAGAGGAGATGCTACTCCATGGGTTCATATCGGTACGTGGTTCGTGATTCGAATCTGCAAGTGGTGTTGTCTCAAAGCCTATCTGATGTTTCGGAAAATGGGAATGTGGAGGGGAAGAGGATAGGCGACTCAGCGAAAGGTGAGAGCTTCTCTGTTTCCAAAATATGGCTTTGGTCCAAGAACAGCAGATTTCATGGTTCTATTGCAGCTTTCCCTTGA 1002 0.4721 MRSIQLEVKQDGGLKYSYPQSPFSAFHTPNDGSISNEKEATTPTSLSRISPLILLVIIVLAVIFFVYGLVHLVLWFFMKRPTPSSLYNSNRFPESIRTSALQRQLQQLFRLHDSGLDQALIDALPVFHYQDLLGSKEPFDCAVCLCGFSEEDKLRLLPMCTHAFHMNCLDTWLLSNSTCPLCRASLSNYVENQNPIFNVDNSLALPNWFGGEEENGCSDGQRSVTAEAQIGGKRVFSVRLGKFRNNGLEGGEVGDSSCSLNERRCYSMGSYRYVVRDSNLQVVLSQSLSDVSENGNVEGKRIGDSAKGESFSVSKIWLWSKNSRFHGSIAAFP 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1351 333 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Ssu6g1351 333 CDD RING-H2_PA-TM-RING 140 183 - -
Ssu6g1351 333 SMART ring_2 141 182 IPR001841 -
Ssu6g1351 333 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 11 333 - -
Ssu6g1351 333 Pfam Ring finger domain 140 183 IPR001841 -
Ssu6g1351 333 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 11 333 - -
Ssu6g1351 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 192 IPR013083 -
Ssu6g1351 333 SUPERFAMILY RING/U-box 120 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1351 Ssu-Chr6 22090827 22091828 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1351 47 330 C3H Transcription Factor Family AT2G18650 40.181 6.45e-54 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1351 - - aprc:113846147 489.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1351 6 22090827 22091828 Ssu6g1351 6 22090827 22091828 ECH