Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1348 ATGGTGGCAGTGGGAAGCAGGTTTTCGGAATGGAGTCCATTTGCAGCGATGGTGATGGTTGAGTGTCTTGACGTGGGTCTCACCACGTTGGGTAAAGCTGCCATGTCCAGAGGAATGAACCACTTCGTCTTTGTTGTCTACTCCAACGCTCTCGCATCTATCATACTCCTCCCTTCCTCTTTCGTCACCAACAGAACAAGATCACCCCTTTCTTTCTCGCTTCTCTGCAAGTTCTTCCTCCTCGGCCTTCTTGGCATAACTATCATGCAGAATTGTGTTTTCACCGGCATTGACTACAGCTCTCCCACTCTTGGATCCGCTATGAGCAACTTGACTCCAGCAATCACTTTTGTGCTAGCGGTCATCCTCAGGATGGAGAAGTTGAATATTGGAAGCTCAATAAGCCAGATCAAAGTCATGGGCACAGTGCTGTCCATCTCTGGAGCATTACTTGTGACCCTTTACAAAGGTAGTCCCATCGGCGGATTTCGAACTCAACCCTCTCCATCACAACCATTGCCATCTCCGTTGGCTGAAACCAGTAACTGGGTTATTGGAGGTCTCTTCCTTGCCACTGCCTCTCTATCTCTTGCAGCCTGGAATATTACTCAGGCAGTAACTGTTAAAGGATATTCATCTCAGTTAACCATAGTAGCGTTCTATTGCCTGTTTGGAACCATCCAAAGTGCAATACTTTCTCTCATTGTAGTCAGAGATCCAAATGCCTGGAAAATAAGCCCTGACATTGAGCTCATCTCTATATTCTATTCAGCTATTGTCGGTAGTGTGGTGACATTTTCTGTACTGACTTGGTGCATAAAAAGGAAAGGACCCGTATTTGTTGTCCTGTTCAAGCCTGTGGGGATTGCCATTGCTGCCTTTTCGAGTGTTGTCTTCCTTGGTGAAACACTCCATGTTGGCAGTGTCATTGGCGCAGGGATAATCGCCATCGGATTTTACACAGTATTGTGGGCACAATCAAAAGAGGACAACGCGAAAAGCCTCGAAGTTGATAGACAATCATCCCCATCTGCCCAAACGAGTCCTCTACTAGAGTCCCTTGAAAGAAATGTTTTGGCATAG 1083 0.4654 MVAVGSRFSEWSPFAAMVMVECLDVGLTTLGKAAMSRGMNHFVFVVYSNALASIILLPSSFVTNRTRSPLSFSLLCKFFLLGLLGITIMQNCVFTGIDYSSPTLGSAMSNLTPAITFVLAVILRMEKLNIGSSISQIKVMGTVLSISGALLVTLYKGSPIGGFRTQPSPSQPLPSPLAETSNWVIGGLFLATASLSLAAWNITQAVTVKGYSSQLTIVAFYCLFGTIQSAILSLIVVRDPNAWKISPDIELISIFYSAIVGSVVTFSVLTWCIKRKGPVFVVLFKPVGIAIAAFSSVVFLGETLHVGSVIGAGIIAIGFYTVLWAQSKEDNAKSLEVDRQSSPSAQTSPLLESLERNVLA 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1348 360 Pfam EamA-like transporter family 25 153 IPR000620 GO:0016020|GO:0016021
Ssu6g1348 360 Pfam EamA-like transporter family 185 323 IPR000620 GO:0016020|GO:0016021
Ssu6g1348 360 SUPERFAMILY Multidrug resistance efflux transporter EmrE 243 328 - -
Ssu6g1348 360 PANTHER WAT1-RELATED PROTEIN 9 351 - -
Ssu6g1348 360 PANTHER WAT1-RELATED PROTEIN 9 351 IPR030184 GO:0016021|GO:0022857
Ssu6g1348 360 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1348 Ssu-Chr6 22050830 22055075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1348 13 357 Nodulin-like Gene Family AT3G28050 43.056 7.08e-86 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1348 - - ccaj:109809148 573.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1348 6 22050830 22055075 Ssu6g1348 6 22050830 22055075 ECH