Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1341 ATGTGGAAATCTCCCACGCGTGGCCactatattgtaatttttaatgtttcttCTTCGTCGTCGTCCTCCGTCGATTCGTTCTATAAGCATGGTCGCAAAATTAGTGCTGGTGACTGTGCGCTCTTCAAACCACCTAAAGACTACCCGCCTTTCATTGGAATAATTCGTTGTATGACAGTTGGTAAAGAGAATAAATTGAAGTTAGGTGTTAATTGGCTTTATCGACCCATTGAAGTAAGACTTGGCAAGGATTTGCTGTTGGAGAATGCTCCAAACGAAATTTTCTACTCCTTTCACAAGGATGAGATTCCTGCTACATCACTGCTTCATCCTTGTAAAGTTGCATTTCTTCCAAAAGGTGTTGAGCTTCACTCAGGGATTTTGTCATTTGTATGTAGGAGGGTTTCTGATGTTACGAACAGGTGTTTACATTGGCTAAGTGATCAAGATATTGATGATCATCAAGAAGTAGATAAGCTATTACATAGGACTCGTGTAGAAATGCATGCAATAGTGCAGCCAGGTGGTCAATCTCCTAAGCCAGGTAGGAAAAGGGAGAAGGTAGATCAAGGGCTAGAATCTGTAAAGCAAGAACATTCAAGCAAAAATGATGATGGAGATTCTGCTGTTATTGTAGCAATAGATAAATTTGATTGCCTTAGTCGGTTTGTGCAACTGAAGGGTTTACCTGTATTTGATGAATGGCTCCAAGAGGTTCATAAAGGGAAGATTGGTGATGGTATTAGGTCTAGGGATGGTGATAAATCTGTTGATGACTTTCTTTTGGCTCTACAAGCTTGTAGCATTGGTAAATCTGTGAATCATTTGCAAACTCATAAAAACACAGAAATTCAGAAGAAAGCAAGGGGCTTAGTTGACACATGGAAAAAACGTGTTAAAGCTGAAATGATTACAAATGATGCCAAGTTTGGTTCAGCTCAGACTGTCCCCTGGCCTGTCAGACAACAGCTTCCTGAAGTCGCTCAAGGTAGGAATAGACATTCTTGTGGATCAGCTGATGTTGCCGTGAAAAGGTCAGTTACACAACTTTCTGCAACCAAAAATACCTCTGTGAAGATTATCCCAGGAGAGAATACTACAAGATCTACGTCAACATCTGCATCTCCAGGGTCTACGACATCAGTGCCTTGCCCTGCACTTGCAACCACAAACTCAAAAGATGGACAGCCCCGTGTTGCTGCGGTTAATGGTTCCTCTGATCTTCCTGTGGCAAATGCAAGGGATGAGAAAAGTAGCAGTTCTAGTCCATCTCACAACAGTCAATCATATTCCAGTGATCCTGCCAAAGCTGGGGATCTCTTAGGAAAGGAGGATGTCAGGAGCTCTACTGCAACGAGTGTGAATAAGGTATCAAGAGGCTCTTCATGGCATCGAAAATCTATGAATGGATTTCCAGACATTAATAAAGAGTCTTGGCAGAGTAACGATTTCAAAGATATATTGACTGGGTCTGATGAGGGTGATGGATCACCAGCAGCCATTACTGATGAAGAACACTGTAGGACTGGTGAGGATTGTAAGAAAGTATTAGATGTATCAAAGACTGCTTCTTCATCACTTGGGAATGAAAGTACAGCTAGAAATTTGCAGGATGCTTCTTACAGCTCCATCAATGCTCTTATTGAAGGTGTTAAGTACACTGAAGCTGATGATGTTGGAATGAATCTTCTTGCTAGTGTGGCTGCTGGAGAGATCTCAAAATCTGAATTGGGAATCCCTGCTGGATCCCCCGAAAAAGACATCACTACTATTGAACAGTCATATGCAGCTGATGCTACAATAGTCAAGTCCTCTGAAGAATACCTGTTCAGTGTAAGTGCTACCCAAATGCTGAACATAAGAAGTAGGATTTTGGATCTGGTGATTTAG 1890 0.4138 MWKSPTRGHYIVIFNVSSSSSSSVDSFYKHGRKISAGDCALFKPPKDYPPFIGIIRCMTVGKENKLKLGVNWLYRPIEVRLGKDLLLENAPNEIFYSFHKDEIPATSLLHPCKVAFLPKGVELHSGILSFVCRRVSDVTNRCLHWLSDQDIDDHQEVDKLLHRTRVEMHAIVQPGGQSPKPGRKREKVDQGLESVKQEHSSKNDDGDSAVIVAIDKFDCLSRFVQLKGLPVFDEWLQEVHKGKIGDGIRSRDGDKSVDDFLLALQACSIGKSVNHLQTHKNTEIQKKARGLVDTWKKRVKAEMITNDAKFGSAQTVPWPVRQQLPEVAQGRNRHSCGSADVAVKRSVTQLSATKNTSVKIIPGENTTRSTSTSASPGSTTSVPCPALATTNSKDGQPRVAAVNGSSDLPVANARDEKSSSSSPSHNSQSYSSDPAKAGDLLGKEDVRSSTATSVNKVSRGSSWHRKSMNGFPDINKESWQSNDFKDILTGSDEGDGSPAAITDEEHCRTGEDCKKVLDVSKTASSSLGNESTARNLQDASYSSINALIEGVKYTEADDVGMNLLASVAAGEISKSELGIPAGSPEKDITTIEQSYAADATIVKSSEEYLFSVSATQMLNIRSRILDLVI 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1341 629 MobiDBLite consensus disorder prediction 358 399 - -
Ssu6g1341 629 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 212 303 IPR035441 -
Ssu6g1341 629 Pfam TFIIS helical bundle-like domain 264 299 IPR017923 -
Ssu6g1341 629 MobiDBLite consensus disorder prediction 358 478 - -
Ssu6g1341 629 Gene3D - 13 211 IPR043151 -
Ssu6g1341 629 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 209 - -
Ssu6g1341 629 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 209 472 - -
Ssu6g1341 629 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 473 608 - -
Ssu6g1341 629 MobiDBLite consensus disorder prediction 412 434 - -
Ssu6g1341 629 SMART TFS2_5 236 301 IPR003617 GO:0005634
Ssu6g1341 629 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 209 472 - -
Ssu6g1341 629 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 473 608 - -
Ssu6g1341 629 ProSiteProfiles BAH domain profile. 32 147 IPR001025 GO:0003682
Ssu6g1341 629 SMART BAH_4 32 147 IPR001025 GO:0003682
Ssu6g1341 629 MobiDBLite consensus disorder prediction 446 465 - -
Ssu6g1341 629 ProSiteProfiles TFIIS N-terminal domain profile. 186 302 IPR017923 -
Ssu6g1341 629 MobiDBLite consensus disorder prediction 171 205 - -
Ssu6g1341 629 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 219 308 IPR035441 -
Ssu6g1341 629 MobiDBLite consensus disorder prediction 180 205 - -
Ssu6g1341 629 Pfam BAH domain 34 123 IPR001025 GO:0003682
Ssu6g1341 629 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1341 Ssu-Chr6 21981165 21984860 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Ssu6g1341 BAH 1.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1341 - - ccaj:109810746 587.415