Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1338 ATGGCATCATTTTCAGGCACTACCCAGAAGTGCACAGTATGTGAAAAGAAAGTGTACTGGGTGGAACAGCTCACTGCTGACAACAAGGTGTACCACAAGTCTTGCTTCAGATGTCACCACTGCAAGGGTACCCTCAAGCTGAGTAATTATTGTTCCTTCGAGGGTGTCCTATACTGTAAGCCTCATTTTGATCAACTGTTTAAGAAGACTGGCAGCTTGGACAAAAGTTTTGAAGGTATTCCAAGAAATCCTAGAGTTGAAAGATCTGCTGATCAgGTCCAAACCAACAACAAGGTTTCAAGGCTGTTTTCCGGAACTCAAGAAAAGTGTGTTGGTTGCAAGAAAACAGTGTACCCAATTGAAAagGTGGCTGTTGATGGCAAATCTTACCATAAGTCTTGTTTCAGGTGCACACATGGAGGTTGTGTAATCAGTCCATCAAATTATATTGCCCATGAACATCGTCTTTATTGCAGACACCACCATACTCAGCTCTTCAAGCAGAAGGGCAACTTCAGTCAATTAGACAAGCATGAAAATGTCCAAGTCATGACTGAAAACACAACACAACATCCAAGTAATGGCAATACAAGTCCAGAAGATGGCTCTTTGTAA 615 0.4179 MASFSGTTQKCTVCEKKVYWVEQLTADNKVYHKSCFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKKTGSLDKSFEGIPRNPRVERSADQVQTNNKVSRLFSGTQEKCVGCKKTVYPIEKVAVDGKSYHKSCFRCTHGGCVISPSNYIAHEHRLYCRHHHTQLFKQKGNFSQLDKHENVQVMTENTTQHPSNGNTSPEDGSL 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1338 204 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Ssu6g1338 204 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 174 - -
Ssu6g1338 204 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Ssu6g1338 204 SMART lim_4 109 161 IPR001781 -
Ssu6g1338 204 SMART lim_4 10 62 IPR001781 -
Ssu6g1338 204 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Ssu6g1338 204 CDD LIM1_SF3 7 69 - -
Ssu6g1338 204 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Ssu6g1338 204 PANTHER OS06G0237300 PROTEIN 1 198 IPR045268 GO:0051015
Ssu6g1338 204 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 36 - -
Ssu6g1338 204 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Ssu6g1338 204 CDD LIM2_SF3 110 170 - -
Ssu6g1338 204 Pfam LIM domain 11 65 IPR001781 -
Ssu6g1338 204 Pfam LIM domain 110 165 IPR001781 -
Ssu6g1338 204 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 198 - -
Ssu6g1338 204 Gene3D Cysteine Rich Protein 5 75 - -
Ssu6g1338 204 Gene3D Cysteine Rich Protein 104 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1338 Ssu-Chr6 21907788 21911262 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Ssu6g1338 LIM 2.9e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1338 K09377 - gmx:100792627 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1338 6 21907788 21911262 Ssu6g1338 6 21907788 21911262 ECH
Ssu6g1338 6 21907788 21911262 Ssu1g2197 1 62447181 62450423 PCT