Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1337 ATGTCGCTCAAGAGGCGCCCCGACGATGGCAAGAATCCAGACGACAAGCGCAGGAAGCCGCCTCCTTTCTCCAGTGTGGTGCGGGACGTGATGAAGTTACAGTCACTCGGGCATTTGCTGGAGCCAATTCTAGAGCCCTTGGTTCGTAAAGTGGTTAAGGAAGAAGTTGAAGCGGCCCTAAAGAGGCATTTAACCAGCATGAAACAGACCTGTGGAAAGGATTTGCATCCTACTGAATTAAGAAATTTGCAGCTGCAGTTTGAAAACAGCATTTCTCTTCCTGTCTTTACAGGAGCTCGAATTGAAGGAGAGGATGGCTCCAACTTAAGGATAAGTTTAGTTGATGCCCTAACAGGGAAGGTTGTTAGTACAGGACCTGAATCATCGGCTAAGGTGGAAATTGTAGTCCTTGAGGGTGAttttgaagaagaaagtgaaaTTTGGATGCCCGAAGAGTTCAAGAGCAATATTGTGAGAGAGAGGGAAGGAAAAAAGCCCCTTCTTACAGGAGATGTAATTTTATATCTCAAAGATGGGATTGGTGTGGTGAGTGAAATTTCATATACAGATAATTCAAGCTGGACTAGGAGCCGAAGGTTCAGGCTTGGGGCAAGAGTTGTGGACAACTTCGATGGTGTTAGAATAAGAGAAGCAAAGACAGAATCATTTATTGTCAGGGATCACAGAGGAGAACTGTACAAGAAGCATCATCCTCCTAGTCTGTCTGATGAAGTTTGGAGATTGGAAAAGATAGGCAAGGATGGAGCTTTCCACAAACGTTTGAGTCGGGAAAAGATCCATACTGTTAAAGAGTTTCTCACACTTCTCAATCTGGATCCAGCAAAGCTGCGCAGTATACTGGGCACTGGGATGTCTGCAAAGATGTGGGAAGTAACTGTGGAGCATGCTCGAACTTGTGTACTTGATACAACGAGGCACCTGTACGTCCCTTCTCATTCTCAACAACCTGGTGTGGTCTTCAATGCCGTGGGACAAGTGACAGGATTGCTTTCTGAATGCGAGTATGTCACAGTAGACAAGCTGTCTGAAGCTGAAAAGGCTGATGCTCAAAACTCGGTTACTGCTGCACTAAGACAAGGGGAGAAATATGCCACTTTCGAAGATGAAGACTCACTCATGGATGGGTCTTCACACTTAACTAATGTACTTTACTCCCCAAGCTCTCCCAAGACCGAGGGATCAAGTGCCAGCAAGCTTTTGGCTCCCCAAAAGATTGGAGGATTCAATTACCCACAAGCAAGTGCCTCTTCTCCAGACATCATGTCATCCATTTATTCTGTTGGTGGAACTAGTAGCTTGGATGACTATTGCTTGCCTAATTTTGACAGCATGGGCCTTAGATATGATCAGACCCTTAGTTTTCCAGTCCAAGTCTCCAACTCTTTGATCTGTGACACTGATTCGATGGCTCATGCTTTTAGTGATGAAGATCATCTGCAATTTTTTGAAACTGATCTTCAATCTCAGTGTCACGTTCAAGCAGATTTACAGAGTGCTGTTGATAGCTTCATGCTGGCACGTTCTACATCCCTGGCCAATGTTGCACAGAGGAGATGGAGAAAGCTATTCAACGTCCTAAAATGGTTCATGGTTAGGAAACGAGGAAACCAAAAACAGATAAGGTTGTGA 1650 0.4448 MSLKRRPDDGKNPDDKRRKPPPFSSVVRDVMKLQSLGHLLEPILEPLVRKVVKEEVEAALKRHLTSMKQTCGKDLHPTELRNLQLQFENSISLPVFTGARIEGEDGSNLRISLVDALTGKVVSTGPESSAKVEIVVLEGDFEEESEIWMPEEFKSNIVREREGKKPLLTGDVILYLKDGIGVVSEISYTDNSSWTRSRRFRLGARVVDNFDGVRIREAKTESFIVRDHRGELYKKHHPPSLSDEVWRLEKIGKDGAFHKRLSREKIHTVKEFLTLLNLDPAKLRSILGTGMSAKMWEVTVEHARTCVLDTTRHLYVPSHSQQPGVVFNAVGQVTGLLSECEYVTVDKLSEAEKADAQNSVTAALRQGEKYATFEDEDSLMDGSSHLTNVLYSPSSPKTEGSSASKLLAPQKIGGFNYPQASASSPDIMSSIYSVGGTSSLDDYCLPNFDSMGLRYDQTLSFPVQVSNSLICDTDSMAHAFSDEDHLQFFETDLQSQCHVQADLQSAVDSFMLARSTSLANVAQRRWRKLFNVLKWFMVRKRGNQKQIRL 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1337 549 Pfam Calmodulin binding protein central domain 240 306 IPR046830 -
Ssu6g1337 549 Pfam Calmodulin binding protein C-terminal domain 313 370 IPR046829 -
Ssu6g1337 549 Pfam Calmodulin binding protein-like N-terminal domain 83 228 IPR046831 -
Ssu6g1337 549 PANTHER CALMODULIN-BINDING PROTEIN 60 A 7 545 - -
Ssu6g1337 549 MobiDBLite consensus disorder prediction 1 23 - -
Ssu6g1337 549 PANTHER OS02G0177800 PROTEIN 7 545 IPR012416 GO:0005516
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1337 Ssu-Chr6 21896977 21901327 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1337 1 354 Calmodulin-binding Proteins AT5G62570 61.496 9.59e-160 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1337 - - gmx:100793156 971.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1337 6 21896977 21901327 Ssu6g1337 6 21896977 21901327 ECH