Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1329 ATGGCCAAAGATTCAACATGGGTGATCGTGGCCAACACAATTGCCAAGGCAGTCAAGGTCTTCCTTGTCGTTCTTGAGCAAATTAGAGGGGACATCCCAGCCGCAACGAAGGAAGACGTGGACCTCGCTGTTGCTGCCGCCAAAGCTGCCCTCTCCCGCAACAAGGGCGCCGATTGGGCCTCAGCTTCGGGCTCCGTTCGGGCCCGCTATCTCCGCGCCATCGCCGCCAAgGTTACCGAGAAAAAGTCTGACCTCGCAAAACTCGAAGCCATCGATTGTGGAAAACCGCTGGATGAAGCCGCGTGGGACATCGACGATGTTGCTGGTTGCTTTGAATTCTATGCTGACCTTGCTGAAAAATTGGACGCGAAGCAAAAGGCTCCCGTGTCTCTTCCCATGGACACATTCAAGAGTTATGTCCTTAAGGAACCAATTGGGGTTGTTGGATTGATAACTCCCTGGAATTATCCTCTGTTGATGGCTACGTGGAAGGTTGCTCCTGCTCTCGCTGCGGGTTGTGCTGCAATACTGAAGCCCTCCGAGTTGGCGTCTGTGACCTGTTTGGAGCTGGCTGAGATTTGCAGAGAAGTGGGCCTTCCTCGTGGTGTGTTGAACATTCTCCCTGGATTAGGGCTTGAAGCTGGTGCTCCTTTAGCGGCCCATCCTGACGTAGACAAGATTGCATTTACTGGAAGCTCTGCAACTGGGAGCAAGATTATGATGGCTGCAGCTCAGCTGGTCAAGCCTGTTTCACTGGAGCTTGGTGGAAAAAGCCCAATCGTTGTTTTTGAGGATGTTGACCTTGACAAGGCTGTTGAATGGACCATCTTTGGCTGCTTCTGGACAAATGGTCAGATGTGCAGTGCAACTTCTCGCCTTATTGTACATGAAAGTATAGCAACAGAGTTTTTGAATAGGATAGTGAAATGGatcaaaaacatcaaaatttcTGATCCGTTGGAAGAAGGTTGCAGACTAGGCCCTATTGTTAGCGAAGGACAGtatgaaaaaatattgaagtttaTCTCAAATGCTAAGAGTGAGGGTGCAACCATTTTGACTGGTGGGTCTTGTCCAGAGCATCTAAAGAAGGGATTCTTTGTTGAACCAACTGTCATAACTGATGTCACTACCTCCATGCAAATTTGGAGAGAAGAAGTATTTGGACCTGTTCTCTGTGTAAAAACATTTAGCACTGAGGAAGAAGCTATTGATCTAGCAAATGACACTGTATATGGCTTAGGTTCTGCTGTAATATCAAATGATCTAGAAAGATGTGAGCGCATTACTAAGGCTTTTAAGGCAGGAGTTGTGTGGATTAATTGCTCTCAACCATGCTTCACTCAAGCCCCATGGGGAGGCATTAAACGCAGTGGTTTTGGTCGTGAATTAGGAGAATGGGGACTTGATAATTACTTAAGTGTGAAGCAAGTGACTCAGTATATCTCTGATGAAGCGTGGGGCTGGTACCAGTCTCCTTCAAAGCTGTAA 1491 0.4695 MAKDSTWVIVANTIAKAVKVFLVVLEQIRGDIPAATKEDVDLAVAAAKAALSRNKGADWASASGSVRARYLRAIAAKVTEKKSDLAKLEAIDCGKPLDEAAWDIDDVAGCFEFYADLAEKLDAKQKAPVSLPMDTFKSYVLKEPIGVVGLITPWNYPLLMATWKVAPALAAGCAAILKPSELASVTCLELAEICREVGLPRGVLNILPGLGLEAGAPLAAHPDVDKIAFTGSSATGSKIMMAAAQLVKPVSLELGGKSPIVVFEDVDLDKAVEWTIFGCFWTNGQMCSATSRLIVHESIATEFLNRIVKWIKNIKISDPLEEGCRLGPIVSEGQYEKILKFISNAKSEGATILTGGSCPEHLKKGFFVEPTVITDVTTSMQIWREEVFGPVLCVKTFSTEEEAIDLANDTVYGLGSAVISNDLERCERITKAFKAGVVWINCSQPCFTQAPWGGIKRSGFGRELGEWGLDNYLSVKQVTQYISDEAWGWYQSPSKL 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1329 496 PANTHER NAD-DEPENDENT ALDEHYDE DEHYDROGENASE FAMILY PROTEIN 15 496 - -
Ssu6g1329 496 CDD ALDH_F10_BADH 26 480 - -
Ssu6g1329 496 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 252 259 IPR029510 GO:0016491
Ssu6g1329 496 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 260 451 IPR016163 GO:0016620
Ssu6g1329 496 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 280 291 IPR016160 GO:0016491
Ssu6g1329 496 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 15 496 - -
Ssu6g1329 496 SUPERFAMILY ALDH-like 27 479 IPR016161 GO:0016491
Ssu6g1329 496 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 27 476 IPR016162 GO:0016491
Ssu6g1329 496 Pfam Aldehyde dehydrogenase family 24 478 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1329 Ssu-Chr6 21716592 21728047 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1329 35 494 Aldehyde Dehydrogenase Gene Family AT1G74920 82.609 0.0 811
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1329 K00130 - gmx:100170731 875.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1329 6 21716592 21728047 Ssu6g1329 6 21716592 21728047 ECH
Ssu6g1329 6 21716592 21728047 Ssu1g2186 1 62206244 62212211 PCT