Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1328 ATGGCTTCTTCAGATCCCATCTCTTCCAGACACCACACCTACAATCGCAAGCAAAAATCTCTGGGCCTCTTGTGCACCAATTTCTTGAGCCTGTACAATCGAGACACCGTCCACTTAATTGGCCTCGACGATGCCGCCTCTCGATTAGGTGTTGAAAGGAGACGCATCTACGACATAGTTAACGTTCTCGAGAGTATTGGAGTGCTCTCAAGGAAGGCAAAAAATCAATACACCTGGAAAGGTTTCGCCGcaattcctctcactctcaggGAGCTGAGGGAAGATGGTTTGAAAGAGAATTCCAATTCCTTGCGCGGTTCCGGCAACGACAATGATAAAGTGTCCGATGACGAAGATGATGAAGAAACGCAGTCCAATCCCGCTACTGGAAGTCAAACTGACAAGTTGAACCCTAATTCTACTCTTTCCGGAAGACCTCTGAAAATTGAAAATCGAAGGGAAAAATCTCTGGCTCTGCTTACCCAGAATTTTGTCAAGCTCTTTGTCTGCTCTAATGTGGAGTTGATCTCCCTTGATGAGGCTGCAAAATTGTTGCTTGGGGATGCCCATAATACGTCGATAATGAGAACAAAAGTTAGACGCCTATATGACATCGCAAATGTGCTATCCTCCATGAATCTTATTGAGAAGACCCATACGACAGATACAAGAAAGCCAGCATTCAGGTGGTTGGGTCCTGAGGGGAAGACATGGAGTGAGTCACTTCACAAATCAAATCTCAACGAATCTAGGAAAAGGGCGTTTGGCAGTGATATCACAAACATCAGTTTTGCGAAGAATAAAGTGGAATTGTTCATGAATGAGGACTTAAATCGGAATCCTAAGAAGTCAAGAATGGAAAATGATAGTGGCCTGGATCGGGGagatgaaaacaatttaaaacaagGCACAAAACAAACTTCAAAGAGCTATCAGTTTGGTCCTTTCGCTCCAGCCTGCGTGCCCAAAGTTGGAGCCTCtgagaataaaaatgagaagCGGGTGCATGACTGGGACAGTCTTGCAACTGCACATAGCCCTCAGTATCAAAACGAAGTACACACCCACTTGTTCTTCATCACCATCACAACCCGTCAGAACATCTCTCTTAAAACCAACCTCCAGCCACTGGTGCGGTCAAATTTGTTGCAAGCAACGCGCGCCTCCTTCGTGTGCCCAGCTGCTCTGGCAGTGAGATTTTCAAAGCTTTGTGATGTCTCTGCCAGCGAGCGAGAGCCAGCTTTGAGAGAACTCTTTTCCCATTACATGGAAGCATGGAGATCGTGGTACTCTGAAATTGCTGGGAAGCGGCCGGTACAAATTTTGTAA 1329 0.4424 MASSDPISSRHHTYNRKQKSLGLLCTNFLSLYNRDTVHLIGLDDAASRLGVERRRIYDIVNVLESIGVLSRKAKNQYTWKGFAAIPLTLRELREDGLKENSNSLRGSGNDNDKVSDDEDDEETQSNPATGSQTDKLNPNSTLSGRPLKIENRREKSLALLTQNFVKLFVCSNVELISLDEAAKLLLGDAHNTSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGPEGKTWSESLHKSNLNESRKRAFGSDITNISFAKNKVELFMNEDLNRNPKKSRMENDSGLDRGDENNLKQGTKQTSKSYQFGPFAPACVPKVGASENKNEKRVHDWDSLATAHSPQYQNEVHTHLFFITITTRQNISLKTNLQPLVRSNLLQATRASFVCPAALAVRFSKLCDVSASEREPALRELFSHYMEAWRSWYSEIAGKRPVQIL 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1328 442 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 7 366 - -
Ssu6g1328 442 SMART E2F_TDP_2 152 232 IPR003316 GO:0005667|GO:0006355
Ssu6g1328 442 SMART E2F_TDP_2 16 81 IPR003316 GO:0005667|GO:0006355
Ssu6g1328 442 Gene3D - 11 83 IPR036388 -
Ssu6g1328 442 Gene3D - 147 233 IPR036388 -
Ssu6g1328 442 MobiDBLite consensus disorder prediction 275 300 - -
Ssu6g1328 442 MobiDBLite consensus disorder prediction 99 148 - -
Ssu6g1328 442 MobiDBLite consensus disorder prediction 275 311 - -
Ssu6g1328 442 Pfam E2F/DP family winged-helix DNA-binding domain 17 81 IPR003316 GO:0005667|GO:0006355
Ssu6g1328 442 Pfam E2F/DP family winged-helix DNA-binding domain 154 232 IPR003316 GO:0005667|GO:0006355
Ssu6g1328 442 PANTHER TRANSCRIPTION FACTOR E2F 7 366 IPR015633 GO:0000978|GO:0006357
Ssu6g1328 442 SUPERFAMILY "Winged helix" DNA-binding domain 154 233 IPR036390 -
Ssu6g1328 442 SUPERFAMILY "Winged helix" DNA-binding domain 15 79 IPR036390 -
Ssu6g1328 442 MobiDBLite consensus disorder prediction 125 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1328 Ssu-Chr6 21709295 21714268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1328 11 358 E2F-DP Transcription Factor Family AT3G48160 56.980 2.28e-120 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Ssu6g1328 E2F_TDP 1.6e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1328 K09391 - gmx:100795252 612.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1328 6 21709295 21714268 Ssu6g1328 6 21709295 21714268 ECH
Ssu6g1328 6 21709295 21714268 Ssu1g2184 1 62158919 62167677 PCT