Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1326 ATGGCTATCGCCGGCGAAGTTTTCCGGCAGAACTTAACCGAAATGCTCGAGGAGTCCCCTTCTGGTGCGCCGGAACTTCACGTGCTCGCCGTCGATGACAGTCTCGTCGATCGCAAGGTGATCGAGCGGTTGCTGAAGATATCTTCCTGCAAAGTGACGGTTGTGGAGAGCGGAACGCGTGCTCTTCAGTATTTGGGGCTCGACGGAGAGAACCGTTCGCTTGGGTTTGATAGTGTGAAGGTTAATCTGATAATGACGGATTATTCCATGCCGGGGATGACAGGATATGAATTGCTCAAGAAAATCAAGCAGGAGTCTTCTGTGTTTAGAGAGATTCCAGTGGTGATCATGTCTTCGGAGAATGTTTTGACTCGAATTGATAGGTGCCTGGAGGAAGGAGCAGAGGATTTTCTGTTGAAGCCAGTCAAATTATCAGATGTAAGACGCTTAAGAGATGTCATCATGAAAGGGAAAGTAAAGGAAGGGGAGAAAAAGTCTCACAAAAGAATGCGATCAATTGATTGCAGTCCCCCTCTATCTGCAACATGCTCACCGATGTCTCTTCCATGCGATCCATCACCATCATTACTCTCACCATTATCCTCAAAGAAGGCTAGATTGTGA 624 0.4744 MAIAGEVFRQNLTEMLEESPSGAPELHVLAVDDSLVDRKVIERLLKISSCKVTVVESGTRALQYLGLDGENRSLGFDSVKVNLIMTDYSMPGMTGYELLKKIKQESSVFREIPVVIMSSENVLTRIDRCLEEGAEDFLLKPVKLSDVRRLRDVIMKGKVKEGEKKSHKRMRSIDCSPPLSATCSPMSLPCDPSPSLLSPLSSKKARL 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1326 207 ProSiteProfiles Response regulatory domain profile. 27 155 IPR001789 GO:0000160
Ssu6g1326 207 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 207 IPR045279 GO:0009736
Ssu6g1326 207 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-LIKE PROTEIN 8 207 - -
Ssu6g1326 207 SMART REC_2 26 154 IPR001789 GO:0000160
Ssu6g1326 207 Gene3D - 26 180 - -
Ssu6g1326 207 CDD REC_typeA_ARR 28 150 - -
Ssu6g1326 207 Pfam Response regulator receiver domain 28 148 IPR001789 GO:0000160
Ssu6g1326 207 SUPERFAMILY CheY-like 25 156 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1326 Ssu-Chr6 21663576 21665608 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1326 5 169 Response Regulator Gene Family AT3G48100 70.833 2.44e-78 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu6g1326 Response_reg 1.5e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1326 K14492 - gmx:100796843 332.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2181 1 62087884 62089893 Ssu6g1326 6 21663576 21665608 ECH
Ssu6g1326 6 21663576 21665608 Ssu6g1326 6 21663576 21665608 ECH