Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1325 ATGAACCATGAGGATATAAAGAAAGTTGGTGGCAAGATGAAAGGAttacttgttgaagaaaatGGGATTGATATTCTTTATATGATGGAAACAGAAGGTAGGCAGTTCAAAACTAGATTCCCAAATAGAAGATATAATCCTAGttatgaagatgatgaagaaaaGGGAACAGATATAATGGGCCAAAGATCCAAACGAATAAAGCCTCAGGAGGTTACAGTTCCACTGCTATGTGAAATTCCAGGTCCACGTTTGATTGATAATGAGAATGTTGTTAAGCCACTATCACAAGTATCTTCTCTGCCTTATTCAATTTCAGCATCTTTGACACCAACTCAACACCAGCCACCACCTCCACTTCCATCACTACCACAAACTGCACCAATGATTCTTGAGAAGAAAactctaccaccaccaccacctcctccaccaccaccaccaccttctTTCCCTCCAAGAATGGAAGTTCCAAAAGCACCTCCTCTGCTTTCATCTCCTATCATGAAAAGAGAAGAGGCTATGGTAGGGGAGAGCTCAAGTGGGAATGGTGCTAACCAAACAAGGCTGAAGCCTCTATATTGGGATAAGGTTGTAGCTAATATTGATCATTCAACAGTGTGGGATCAGATCAGTGATGGCTCATTCTGGTTTGATTATGAACTCATGGAAACCGTCTTTGGATATTCAAGTAACAATCAAACTCAAGAAAAGAATAGGCGTCTTCCAACTTCAACTAAGTCCAACTCCAACACACCAACTCAATTATTCATTCTGGACCCTCGAAAGTCCCAAAACATAGCAATTGTGCTAAGATCTCTTGCAATTTCTCGCAAGGGAATCCTGGATGCACTCCATGATGGCCAAGGACTCAGTGCAGAGACACTCGAACGGCTCACCAAAATAGCTCCTACCCAAGAAGAAGCAGCCAAACTCATCCAATTCAGTGGCAATCCAGATAAACTTGCTGATGCCGAGTCATTCCTCTATCACATCCTGAGAGCAGTTCCAACAGCATTCATTCGTTTAACAGCATTGCTTTTCAGATCAAGTTATGGTTGTGAAGTTATTCAGCTTAAAGAACACCTAAAAACTCTTGAAATGGGTTGTCATGAGATGAAGACTAGTGGTCTTCTTTTGAAATTCCTTGAGGCCATTCTCAAAGCTGGCAACCGAATGAATGTGGGAACTTCAAGAGGCAATGCTCATGGTTTCAACTTAAGTGCTCTTAAAAAGCTCTCGGATGTAAAAAGCACAGATGGGAAGACTAGTTTACTTCACTTTATTGTTGAGCAGGTAGCTCAGTTTGAAGGAAGACAACAAGCTATTAATCAAAAGCACAACCTTCGCAGTAGCATTAGTGAAACAAGCAACACCAGTGAACCAAATACAGGTTACCTTATACAACAAGAGGAAGTCAAAGAGTATCTAATGCTAGGTTTGCCGGCGTTAGGAGGGCTAAAGGATGAGTTATGTGAAGTAAAGAAAGCAGCAAGCATTGAGCATCAGAATTTCATCATGAGAGAGGTGGATTTATTAATGAAAGGACTTGTAGAGGAATGTGAGGTGCAGCTTAGGGAGGTGAGAGAGGAACAGACAAGGGTCATGGAACTTGTGAAGAAAACCAATGAGTATTATCTAACAGGAGGTTCCAAAGATAACACGTCAAACCCCTTTCAACTGTTTGTTACAGTAAAAGAATTTGTTGACATGGTAGATGAGGTTTGCATAGAACTTAGAAGGAAGCTAGAAAAGAATAACGTAGGAGGAGAAGCTGTATCAACACCACCTCTTTCACCTTCAAAGAGGGCGCCACTCAGAGTCCCAAACTTCGATTTGCATTTTCTGACAAGCGTGTCAGGAGCAACATCTTCCAGCCAATCAGATGATGATTTTTGA 1896 0.3956 MNHEDIKKVGGKMKGLLVEENGIDILYMMETEGRQFKTRFPNRRYNPSYEDDEEKGTDIMGQRSKRIKPQEVTVPLLCEIPGPRLIDNENVVKPLSQVSSLPYSISASLTPTQHQPPPPLPSLPQTAPMILEKKTLPPPPPPPPPPPPSFPPRMEVPKAPPLLSSPIMKREEAMVGESSSGNGANQTRLKPLYWDKVVANIDHSTVWDQISDGSFWFDYELMETVFGYSSNNQTQEKNRRLPTSTKSNSNTPTQLFILDPRKSQNIAIVLRSLAISRKGILDALHDGQGLSAETLERLTKIAPTQEEAAKLIQFSGNPDKLADAESFLYHILRAVPTAFIRLTALLFRSSYGCEVIQLKEHLKTLEMGCHEMKTSGLLLKFLEAILKAGNRMNVGTSRGNAHGFNLSALKKLSDVKSTDGKTSLLHFIVEQVAQFEGRQQAINQKHNLRSSISETSNTSEPNTGYLIQQEEVKEYLMLGLPALGGLKDELCEVKKAASIEHQNFIMREVDLLMKGLVEECEVQLREVREEQTRVMELVKKTNEYYLTGGSKDNTSNPFQLFVTVKEFVDMVDEVCIELRRKLEKNNVGGEAVSTPPLSPSKRAPLRVPNFDLHFLTSVSGATSSSQSDDDF 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1325 631 MobiDBLite consensus disorder prediction 107 126 - -
Ssu6g1325 631 PANTHER FORMIN-LIKE PROTEIN 513 626 - -
Ssu6g1325 631 PANTHER FORMIN-LIKE PROTEIN 3 506 - -
Ssu6g1325 631 SMART it6_source 180 586 IPR015425 -
Ssu6g1325 631 SUPERFAMILY Formin homology 2 domain (FH2 domain) 138 584 - -
Ssu6g1325 631 PANTHER FORMIN-RELATED 513 626 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Ssu6g1325 631 Pfam Formin Homology 2 Domain 185 571 IPR015425 -
Ssu6g1325 631 Gene3D Formin, FH2 domain 182 582 IPR042201 -
Ssu6g1325 631 ProSiteProfiles Formin homology-2 (FH2) domain profile. 179 597 IPR015425 -
Ssu6g1325 631 MobiDBLite consensus disorder prediction 133 159 - -
Ssu6g1325 631 MobiDBLite consensus disorder prediction 131 162 - -
Ssu6g1325 631 MobiDBLite consensus disorder prediction 232 254 - -
Ssu6g1325 631 PANTHER FORMIN-RELATED 3 506 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1325 Ssu-Chr6 21658541 21660706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1325 1 629 FH2 protein (formin) Gene Family AT1G70140 37.741 3.01e-127 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1325 - - gsj:114409782 752.281