Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1318 ATGTCTCGCGCCTGCGTCGCCGCAGACTCCACCGCCTCCGGCGAGATCATGCTGTTCGGGGTCAGGGTCGTGGTTGATTCGATTAGAAAGAGCGTCAGCATGAACAACCTCTCACAGTACGAGCGTCCTCAAGACGCCAACAACGACAACAACAGCAGCAGCAACAAAGACGCTCTCGCCGCCAGTTACGCCTCCGCCGACGACGCCGTTCCTCATAACTCCGGCCGCCACCGCGAGCGCGAGCGGAAGCGAGGGGTTCCGTGGACGGAGGAAGAGCACAAGCTGTTTTTGGTGGGATTGCAGAAGGTAGGGAAAGGTGATTGGAGAGGAATCTCCAAAAACTACGTCAAAACGCGAACGCCGACGCAGGTTGCAAGCCATGCTCAGAAGTACTTTCTCCGGCGAAGTAACCTCAATCGCCGTCGCCGTAGATCCAGTCTCTTTGACATCACCACCGACACGGTGTCTGCAATCACAATGGAGGAAGCACAGGTACGGAATCAAGACATGTCTCCTTCACAACCTGTGTGCCCTGCAGTCAGTGAAACTAGCAAAATCAATGGGTTTCCAATGATGCCAGTGTATCAATTGGGGGTTGGTTCTGGTGTGATTTCAGTCCAAGGTGGAAATCCAATGGAAGAACTCACTCTGGGACAAGGGAACATGGAACACCAACATGTGCCAACCAATCTAGTCCGTGCGATTCCTGTTGTTGCAGATCCTAAAGCTTCTACAGTGTCTGATATCATCAGCCTCAGTTCTAGTTCTGCCGTTGACCCACCGACACTGTCCCTGGGGCTATCCTTCTCACCTGACCAAAGGCAGACATCATCAAGACATTCAGCTTTACATGCCATACCATGTTTCAACAATGGAGATAGCATCATTAGTGTTGCTTGA 900 0.5244 MSRACVAADSTASGEIMLFGVRVVVDSIRKSVSMNNLSQYERPQDANNDNNSSSNKDALAASYASADDAVPHNSGRHRERERKRGVPWTEEEHKLFLVGLQKVGKGDWRGISKNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVSAITMEEAQVRNQDMSPSQPVCPAVSETSKINGFPMMPVYQLGVGSGVISVQGGNPMEELTLGQGNMEHQHVPTNLVRAIPVVADPKASTVSDIISLSSSSAVDPPTLSLGLSFSPDQRQTSSRHSALHAIPCFNNGDSIISVA 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1318 299 ProSiteProfiles SANT domain profile. 83 136 IPR017884 -
Ssu6g1318 299 MobiDBLite consensus disorder prediction 39 60 - -
Ssu6g1318 299 CDD SANT 87 132 IPR001005 -
Ssu6g1318 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 136 IPR017930 -
Ssu6g1318 299 SMART sant 84 134 IPR001005 -
Ssu6g1318 299 Pfam Myb-like DNA-binding domain 87 132 IPR001005 -
Ssu6g1318 299 Gene3D - 86 138 - -
Ssu6g1318 299 MobiDBLite consensus disorder prediction 39 86 - -
Ssu6g1318 299 SUPERFAMILY Homeodomain-like 82 137 IPR009057 -
Ssu6g1318 299 PANTHER KIN2 13 299 - -
Ssu6g1318 299 MobiDBLite consensus disorder prediction 71 86 - -
Ssu6g1318 299 ProSiteProfiles Myb-like domain profile. 80 132 IPR001005 -
Ssu6g1318 299 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 13 299 - -
Ssu6g1318 299 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 83 134 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1318 Ssu-Chr6 21543943 21545465 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu6g1318 Myb_DNA-binding 3.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1318 - - gmx:780536 394.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1318 6 21543943 21545465 Ssu1g2172 1 61933655 61934116 PCT