LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu6g1316	ATGAAGGTGATGAGGAAGGACaccatcattaaaaaaaaccaCGTCGATTACATGAAAGCCGAGAGAGATATCCTCACTAAAGTCCTTCACCCTTTTATTGTTCAGCTCCGTTACTCTTTTCAGACCAAATCTAAGTTATATTTGGTGTTGGACTTCATAAACGGAGGGCATCTCTTCTTTCATTTGTATCGCCAGGGTATCTTCAGTGAGGATCAGGCAAGGCTTTACACTGCTGAGATAGTGTCTGCTGTTTCACATCTTCACAGCAACGGCATCGTGCACCGGGATCTTAAGCCTGAAAACATTCTTATGGATGCTGATGGCCATGTCATGCTAACTGATTTTGGACTGTCAAAAGAGATTGATGAATTGGGAAGATCCAACTCTCTGTGTGGGACCGTCGAATATATGGCTCCTGAAATCCTACTGGGTAAAGGCCATAACAAGGATGCTGATTGGTGGAGTGTTGGTATTCTGTTGTATGAAATGCTAAAAGGGAAGGCACCATTTACACACACTAACAGAAAGAAACTTCAggagaaaattattaaagagaAAGTTAAACTTCCACCATTCCTTACCAGTGAAGCTCACTCTTTGCTCAAAGGATTGCTGCAAAAGGATCCATCGACAAGGTTAGGCAGTGGGCCAAATGGAGTTGACCAGATCAAAAGTCATAAATGGTTTAGGTCAATCAATTGGAAAAAGTTGGAGGCAAGAGAACTGGAACCAAAGTTTAAACCTGATGTGTCTGGGAAAGATTGTACAGCTAATTTTGATCAATGTTGGACAGCAATGCCTCCTGATGACTCGCCAGCACCCACACCTACAGCCGGTGACCATTTCCAGGGCTATACTTATGTGGCACCCAACCCTTGGCTTTCATCTGGCTAG	894	0.4206	MKVMRKDTIIKKNHVDYMKAERDILTKVLHPFIVQLRYSFQTKSKLYLVLDFINGGHLFFHLYRQGIFSEDQARLYTAEIVSAVSHLHSNGIVHRDLKPENILMDADGHVMLTDFGLSKEIDELGRSNSLCGTVEYMAPEILLGKGHNKDADWWSVGILLYEMLKGKAPFTHTNRKKLQEKIIKEKVKLPPFLTSEAHSLLKGLLQKDPSTRLGSGPNGVDQIKSHKWFRSINWKKLEARELEPKFKPDVSGKDCTANFDQCWTAMPPDDSPAPTPTAGDHFQGYTYVAPNPWLSSG	297

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu6g1316	297	SMART	pkinase_C_6	230	289	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Ssu6g1316	297	PANTHER	NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE	1	296	-	-
	Ssu6g1316	297	SUPERFAMILY	Protein kinase-like (PK-like)	1	288	IPR011009	-
	Ssu6g1316	297	Pfam	Protein kinase C terminal domain	250	287	IPR017892	GO:0004674\|GO:0005524\|GO:0006468
	Ssu6g1316	297	Gene3D	Phosphorylase Kinase; domain 1	1	271	-	-
	Ssu6g1316	297	ProSiteProfiles	AGC-kinase C-terminal domain profile.	230	297	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Ssu6g1316	297	Pfam	Protein kinase domain	1	229	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu6g1316	297	Gene3D	Transferase(Phosphotransferase) domain 1	53	248	-	-
	Ssu6g1316	297	PANTHER	RIBOSOMAL PROTEIN S6 KINASE	1	296	-	-
	Ssu6g1316	297	SMART	serkin_6	1	229	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu6g1316	297	ProSiteProfiles	Protein kinase domain profile.	1	229	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu6g1316	297	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	92	104	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu6g1316	Ssu-Chr6	21532878	21535814	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu6g1316	1	290	AGC Kinase Gene Family	AT3G08720	71.331	9.02e-159	449

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC-Pl	Ssu6g1316		Pkinase	1.4e-65	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu6g1316	K04688		-	gmx:100798259	582.022