Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1313 ATGGAACCTCCCCTCATCAACGACTCCACATTCTCTTCCGCTAACCCTTCCTTGTCCGAGATTTGGCCCCCCGACCACACTCCCAGGAAGAGGCATACCCTCCTCTCCCCCTCCCCGAATTACTGTGGCtgcaataaacatataaaattagcAGCAGGAGGATCCCATTCCCAGGATGAAAACGGTGCGTTGAAGGGTGAAGCAGATGCGACTTCCGTAGCCGGTAACAGGTTACCTCAACAAACTGCTAAGCCTACTTCTGAGCAGCCACCTAAGCAAGACTACATACACGTGAGAGCCAGAAGGGGCCAAGCCACCGATAGCCACAGTCTCGCTGAGAGAGCGAGAAGAGAAAAGATCAGTGAGAGGATGAAAATTCTTCAAGATTTAGTCCCCGGGTGCAACAAGGTAATTGGTAAAGCACTTGTCCTGGAcgagataattaattatatccaGTCACTGCAGCGTCAGGTTGAGttCCTTTCAATGAAGCTTGAGGCAGTTAATTCGAGATTGAACATGAGCCATACTATTGAAAGTTTTCCTTCAAAAGACGTTGGCACTCAGCCATTTGACCTTGCCGGAATAATATTTGGATCACAACCGGCCAGGGGATATGCTCAAGGATCACAACCTAGTCAATTGATGCAGATAGCTGGTGGTTTTGAGAAAGCTACATAA 681 0.4626 MEPPLINDSTFSSANPSLSEIWPPDHTPRKRHTLLSPSPNYCGCNKHIKLAAGGSHSQDENGALKGEADATSVAGNRLPQQTAKPTSEQPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNMSHTIESFPSKDVGTQPFDLAGIIFGSQPARGYAQGSQPSQLMQIAGGFEKAT 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1313 226 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 104 154 IPR011598 GO:0046983
Ssu6g1313 226 MobiDBLite consensus disorder prediction 74 89 - -
Ssu6g1313 226 MobiDBLite consensus disorder prediction 1 20 - -
Ssu6g1313 226 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 54 226 IPR024097 GO:0006355
Ssu6g1313 226 MobiDBLite consensus disorder prediction 1 38 - -
Ssu6g1313 226 Coils Coil 151 171 - -
Ssu6g1313 226 MobiDBLite consensus disorder prediction 53 93 - -
Ssu6g1313 226 PANTHER BNAC05G07950D PROTEIN 54 226 - -
Ssu6g1313 226 SMART finulus 110 160 IPR011598 GO:0046983
Ssu6g1313 226 Pfam Helix-loop-helix DNA-binding domain 108 155 IPR011598 GO:0046983
Ssu6g1313 226 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 102 174 IPR036638 GO:0046983
Ssu6g1313 226 CDD bHLH_AtBPE_like 94 173 - -
Ssu6g1313 226 Gene3D - 101 180 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1313 Ssu-Chr6 21465055 21468049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1313 1 23 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 73.077 7.73e-06 43.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu6g1313 HLH 1.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1313 - - gmx:100799646 363.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2169 1 61812127 61815746 Ssu6g1313 6 21465055 21468049 ECH
Ssu6g1313 6 21465055 21468049 Ssu6g1313 6 21465055 21468049 ECH