Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1309 ATGGCCAACGGATCCCCTCCTCCGGTTCCCGGCGAACGATCTTCGCCGTCGCCGGAATCCAATCCCCCGAACCACGTCTCCGATTCGAAGGAGGAAGCCGCCGCCGCTCCTCCCCCCACCACCAGGAGCACTCGCCCGTCCCGAGCGTGCACCATGCGCGCCGCCTCTCGCCTCCATTCCTCGCCGGCGCCGGCGAAGAAGGAGGATTCACCGTTGCCGCCACCGTCGCAATGCAGCAAGATCGTGACGCCGCTGGTGGAGCCGCCGTCGCCGTTGCAGTTGCCCCGGTTGAACCTGCGGTCGATGTGGGAGTTCGCTTCCGTGCTAAATTTCTTGCATCTGTTCAGGCCTCTTTTGAATATCTCTCTGGAATTCTCTGCAGAAGAGTTTGAGACAGCTCTCCTTACACCAAACGATACTttatttcatatacatatgcCTTTGCTAAAGGCAATCCCTCCTATTACACGGATGGCACTCACACGTGATACTTGGATAACCATATTATGCAGGAAATTGAGAGATTGGTGGCATTGGGTTGCCGATGGGGATCTTCCAATTGTTGCTTCACATGGGGCGGAGATTGAAGTATATAAATCACTTGATCCAGGGGTCCGTGTTGTCATCTTAAAAGCATTATGTGACATTCGTGTGGAGCAAGAAGATATCCGAAGTTATATTGACAACTCAATTAAACATGGTGTTCAACTTTCAACATTCCGTAAAGAGCGTATTGGAGGTGATTCACATGGAATTTCTTATTGGTATGAAGATGACCCCATTATTGGTCATAGGTTGTATCGAGAAATAAGGAAAACTGAAGTGATTCAAATGAAGAAAGGGAAAGCAAGAGGTTCCCAGGTTCTTTCTAATACATCATACCAGTGGGAAGCAGTTGCTACcaattttgatgaatttcaaGATGTTTCTGAGAAGCTTTTCTCAAGTAAAAACAGAACAGAGGCTTCTGTGGGGAAAAAGCTGAAGATAGACATGCTTCCTGAAATTGAGAAAGTTCATAAGAAAAAGGAGAAGTTGCTGAAAAAGCAACACAGACAAGCTCTTCTTCTTGATAATTGCTTGGTTGTTGATGGGCTTGGTCCTGGGCGTTCTCTTCGTGACAGGAAACCTGTTACCTACACTTTTGATGATTATGATCGCTCAATCAATGAGGCAATTAAAGTAACCAAGCAGAAACAGCCATCTCCAGAACATATGCCCAGGAGAGAATTGGTAGCAAAACCTGAAGCTTCGACTAATGGTAAATATGGTCCTCCGCATGCCACACAAGATCTGAATTTTGGTATGCCATCTCCAGAATCGTCTGACTCTGATGATGACAAGGAAGATCATGAAACTGACACCTTGGATCGAAGCAATCGTCGAAGACAGAGACCTAAACGGTATTCAGAAAGAGAGTTTGTTGAAGCAGTATTGGATAATGAGGCAGACTTCGACAGTGATGACGAAATTGTTGGAGAAGCTGTATATGATGAAGAATATCTCAAGAAACGCAAGCAGAAAACAAAGTCTTCTAGTAGCTCTGAAGGAGATGAAGAATATCAGTGGGACGAATACAATGttgaagatgatgaagaagatgatgatgatgatgatgatgattccTTGAGCATCAGTGAGGATAGTGACAAAGCCCGTAAGGTCAAACAGTTGCCAGGCCGTACTAGGAGAGAAACTAAACTCAGGTCTGTGGGTGAGATTCAATCAGGTCTAAGACGCAGTAAGAGGGCAACTAGAAATCGTATAAATTACCGACAATATGAGGCGTCAGAATCAGAAACAGAGTTTGTCAAATCTGAGAAGTCTAATACTTCAGCTGATCACTCTGATCCCAGTGAGAATGGTGAATACATGATGGAAAGTGAAGATTCAGACGGCAGTGATGAAGATCAAGAAATGAAAGTAGATGAGCCTGTTACTTCTCCTGCAGTAGAAGAGAATGAACAAAACCAGCCTTCTGAAAAATTAAGTAGTCCTGGTCAGGAGGAAGTTGAGAGCACAGGAAAAAGACGCTTCCTTGACCTGAATGAGCTTGCCCCTAGCACTGGTTTTGATGATGGTCCAAACACGAATGAAAGATGA 2103 0.4408 MANGSPPPVPGERSSPSPESNPPNHVSDSKEEAAAAPPPTTRSTRPSRACTMRAASRLHSSPAPAKKEDSPLPPPSQCSKIVTPLVEPPSPLQLPRLNLRSMWEFASVLNFLHLFRPLLNISLEFSAEEFETALLTPNDTLFHIHMPLLKAIPPITRMALTRDTWITILCRKLRDWWHWVADGDLPIVASHGAEIEVYKSLDPGVRVVILKALCDIRVEQEDIRSYIDNSIKHGVQLSTFRKERIGGDSHGISYWYEDDPIIGHRLYREIRKTEVIQMKKGKARGSQVLSNTSYQWEAVATNFDEFQDVSEKLFSSKNRTEASVGKKLKIDMLPEIEKVHKKKEKLLKKQHRQALLLDNCLVVDGLGPGRSLRDRKPVTYTFDDYDRSINEAIKVTKQKQPSPEHMPRRELVAKPEASTNGKYGPPHATQDLNFGMPSPESSDSDDDKEDHETDTLDRSNRRRQRPKRYSEREFVEAVLDNEADFDSDDEIVGEAVYDEEYLKKRKQKTKSSSSSEGDEEYQWDEYNVEDDEEDDDDDDDDSLSISEDSDKARKVKQLPGRTRRETKLRSVGEIQSGLRRSKRATRNRINYRQYEASESETEFVKSEKSNTSADHSDPSENGEYMMESEDSDGSDEDQEMKVDEPVTSPAVEENEQNQPSEKLSSPGQEEVESTGKRRFLDLNELAPSTGFDDGPNTNER 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1309 700 MobiDBLite consensus disorder prediction 415 700 - -
Ssu6g1309 700 MobiDBLite consensus disorder prediction 623 639 - -
Ssu6g1309 700 MobiDBLite consensus disorder prediction 650 670 - -
Ssu6g1309 700 MobiDBLite consensus disorder prediction 480 495 - -
Ssu6g1309 700 MobiDBLite consensus disorder prediction 546 570 - -
Ssu6g1309 700 PANTHER REMODELING AND SPACING FACTOR 1 18 698 IPR028938 GO:0006355|GO:0031213
Ssu6g1309 700 PANTHER DDT DOMAIN-CONTAINING PROTEIN DDR4 18 698 - -
Ssu6g1309 700 MobiDBLite consensus disorder prediction 518 545 - -
Ssu6g1309 700 MobiDBLite consensus disorder prediction 593 614 - -
Ssu6g1309 700 MobiDBLite consensus disorder prediction 496 517 - -
Ssu6g1309 700 MobiDBLite consensus disorder prediction 1 85 - -
Ssu6g1309 700 MobiDBLite consensus disorder prediction 1 17 - -
Ssu6g1309 700 MobiDBLite consensus disorder prediction 451 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1309 Ssu-Chr6 21391718 21398730 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Ssu6g1309 WHIM1 0.00018 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1309 - - gmx:100795519 1160.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1309 6 21391718 21398730 Ssu6g1309 6 21391718 21398730 ECH
Ssu6g1309 6 21391718 21398730 Ssu1g2165 1 61622937 61631941 PCT