Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1306 ATGGACGGCGGCGATCCTTCCCTGTCGGATAAAGAGGAGGAGAACGATGAGGAAGACGTGGCGGAAGTTCTGTTGCGAATTCAACTCGTCGATGCTCCCATACTCTTGTTCGTTTGTTTCCATAAAGCTCTGCGCTCTGAACTCGATCACCTTCGTCGCTTGGCGGAAACGGCGTCGTCGTTGGAGGACGAGCCACGCCGTTGCCAACAAATAATCCTTCAGCTTCAACGTAGATTCCAGTTTCTGAAATTAGCTCATAAGTATCATTGTGCTGCGGAAGACGAGGTTATCTTCCTTGCACTGGATACACATGTGAAAAATGTCGTATGTACATATTCCCTTGAACATAACAGCACCAGTGACCTTTTTGattctatttttcacttctTGGATGAGTTGATGGTTCCTAAAGAGAGTATTTCCAAGCTGTTCCAAGAACTTGTGTACTGCATTGGCATCTTGCAAACCTCCATCTACCAACATATGCTGAAAGAAGAAGAGCAGGTTTTTCCTCTGTTGATGCAGAAATTATCTACTAAAGAACAGGCCTCACTTGTGTGGCAATTCATATGTAGTGTTCCTATAATGTTGCTGGAGGAAGTTTTGCCATGGATGGTATCCTTCCTTTCTGCAAACAAACAATCAGAAGTTACCCAGTGTTTAAATGAAATTGCACCAATGGAAAAAGCACTGCAAGAGGTTTTGGTTTCTTGGCTTAGAAGCAACAAACAAACCTTCACCGAAACCTGTTTTCAGAGTGAAGAATTTCAAAGTGCTGATGGATTCCTACATATAGAAAGGTCACTTGGGCTGAGTTATTGTAATAGGAACTCCAAAGAAATTTCAAGTCGGATGAAAGTGAATGGCCAAGAAATAGAAGATGGGGCCAACCAGGTTAATGTCCTTCATCTTTGGCATAATGCCATCATGAAAGATTTGAAAGAAATTCTGAAAGAACTTTATCTACTAAGAAAATCCAGCTGTTTTCAGAATTTAGACTCAATACTTATCCAACTAAAATTCTTTGCCGATGTCCTCATCTTCTACAGCAATGCTCAGAAGAAATTCTTTCATCCTGTACTGAATAAACATGCATATGACTGGTTGTCCAAGTCTATTGAACAATTTCTTGGTGAAAGTAACATTGAAGATATACAACAGTTGCTATTTTATAACTCAGAAAGTGGAATACCTTTGAGCAAATTCGTAGAGAAGCTTTGCCTAAAACTTGAATCATTTGTATTAGGAGTCAACAAACAATTTGCTTTTCAAGAAAATGAGgtaTTTCCTATCATTAGAAAGAATTGCAGAAATGGAATGCAAGAGAGACTTCTAAGCTTGAGCCTGCATATGATGCCTCTTGGATTACTAAAATGTGTTATAACTTGGTTTTCAGTTCACTTGTCTGAAAAAGAGTCGAGATCCATTCTCCATTGCATAAAGAAAGGAAACAATTCTGTCTGTAAAGCTTTTTCATCACTGTTACATGAGTGGTTCCGCATTGGTTATTCAGGTAAAACCTCTATTGAAAAATTCAGACAAGACTTGCAACATATGTTCAAAAGAAGATGCTCCTTTTTACCTGAACAAATGAAGGAAGCTCGTGGATTTTCTCTCTTAAATTCTGAGAAGCAGCCTCTTAAAGTCTCTGGTCCGAATTGTTTGTCCCATTCCTCCTCTTCTGGATCCAGTAATATAAACAAGTATGAGACACCATACTCCACAGGAATTAATCTGCATATATTTTTTCCTGCCACAGTTGTGAAGTTACATCAGCATCCTGCATTACACGCAGCGAAATGTTCTTCTATTTCCTTTCTTGATGATCCAAAACCAATTGacctaatatttttctttcacaaaGCTATCAAGAAAGATTTGGAGTACCTAGTTCTTGGCTCAGCTCagttagaaaaaaatgataagttgCTTATGGATTTCCAAAAAAGATTCCATCTCATATGTTTTCTTCATCAAATCCATAGTGATGCAGAGGATGAGATAGTTTTTCCAGCCTTGGAGGCAAGGGGTAAACTCAAAAACATTAGCCATGCCTATACCTTTGATCACAAACATGAAGTTGAgcacttaaataaaatatctcgCATCCTTGATAAGATGTCTGGATTACATCTTTCAGTTTCTACAATTGATTCAAATATAAGGGAGAAGGGAATGCTAAGGTATCACCATTTATGCAGGAAGCTGCAAGAAATGTGCAAATCAATGCATAAGTTACTCTCTGATCATATAAACCGTGAGGAAATAGAAATTTGGCCTATGATTAGAAAATTCTTCTCAAATCAGGAGCAAGGGAAGATCATAGGATGCATGCTTGGAAGAATAAGAGCAGAAATATTACAAGATATGATGCCTTGGCTAATGGCATCTTTAACACAGGAAGAACAACATGTTTTAATGTTCTTATGGTCCATGGCtactaaaaatacaatgtttGATGAATGGTTAGGTGAATGGTGGGATGGGTACAGTTTAACTAAGGTAACAGAGCAATCAAATGATGCCCCTCTACAGCCTGTTGAGCCACTGGAGATTATATCCAAATATTTAtctgaagaaattttaaatgaattgcAAGAAGAATCATCTGCCAACAAAAGCATAAATTTTTTGCAGAAGGATCATATTGGTGATAATGTTGAGCTGTCTAACTACAACTTTGATGATGAAGTTAAGGTTCATGATGcagaacaaaataatcaatgttCAAAAtgcataaatcaatttcatgataataacaaacatgcTTGCAATGTAGTAACAGATATCACAAATCCGATAAACAATGAATGCAAGTCTTCTCATCTTTGTGACAAGTCTGGGCGTTATGACCGACTTTTGAAATTGAGTCAAGATGATTTGGAGATGGCAATAAGAAGGGTGTCTCGTGACTCTTGCTTAGATCCTCAGAAAAAGTCATACATAATACAGAACCTACTAATGAGCCGTTGGATTGTTAGACAGCAGATCTCTTCTACAgaagtcaatataaaaaatgaactgGAATTTCCTGGGAAGCATCCGTCTTACAGGGACCCTCTCAAACTAATCCACGGTTGTAAACACTACAAGAGAAACTGTAAACTTTTTGCTCCATGTTGCAACCAACTTCATACCTGCATACATTGCCATAACGAGGAATCAGATCATTCAATTGACAGAAAATCTATTACAAAGATGATGTGTATGAAGTGCTTGATGATTCAACCAATCAGCGCCACATGCTCAACAGTTTCTTGTAATTTATCCATGGCAAAATATTACTGCAGGATCTGCAAATTATTTGATGATGAAAGGGAAATTTACCACTGTCCTTATTGTAACCTGTGCCGAGTTGGAAAGGGTTTGGGTGTAGACTACTTTCACTGTATGAATTGCAATGCTTGTATGTCTCGATCTCTTATGAAACATACATGCAGGGAGAAACATTTAGAGGATAACTGTCCAATTTGTCATGAATATATCTTCACATCCTGCTCTCCGGTAAAATCCCTCCCATGTGGTCATGTGATGCACTCAACATGTTTTCAGGAATATACCTGCTTTAATTATACCTGCCCAATATGTAGCAAGTCACTTGGAGACATGCAGGTATATTTTAGGATGTTAGATGCGTTATTGGCTGAAGAGAAAATTTCTGATGAGATTTTGGGTCAAACTCAGgttatattatgtaatgacTGTGAAAAGAAAGGAGCGGGCCCCTTCCACTGGCTCTACCACAAATGTCCTAGTTGTGGTTCCTACAACACTAGAGTTTTGTGA 3786 0.3661 MDGGDPSLSDKEEENDEEDVAEVLLRIQLVDAPILLFVCFHKALRSELDHLRRLAETASSLEDEPRRCQQIILQLQRRFQFLKLAHKYHCAAEDEVIFLALDTHVKNVVCTYSLEHNSTSDLFDSIFHFLDELMVPKESISKLFQELVYCIGILQTSIYQHMLKEEEQVFPLLMQKLSTKEQASLVWQFICSVPIMLLEEVLPWMVSFLSANKQSEVTQCLNEIAPMEKALQEVLVSWLRSNKQTFTETCFQSEEFQSADGFLHIERSLGLSYCNRNSKEISSRMKVNGQEIEDGANQVNVLHLWHNAIMKDLKEILKELYLLRKSSCFQNLDSILIQLKFFADVLIFYSNAQKKFFHPVLNKHAYDWLSKSIEQFLGESNIEDIQQLLFYNSESGIPLSKFVEKLCLKLESFVLGVNKQFAFQENEVFPIIRKNCRNGMQERLLSLSLHMMPLGLLKCVITWFSVHLSEKESRSILHCIKKGNNSVCKAFSSLLHEWFRIGYSGKTSIEKFRQDLQHMFKRRCSFLPEQMKEARGFSLLNSEKQPLKVSGPNCLSHSSSSGSSNINKYETPYSTGINLHIFFPATVVKLHQHPALHAAKCSSISFLDDPKPIDLIFFFHKAIKKDLEYLVLGSAQLEKNDKLLMDFQKRFHLICFLHQIHSDAEDEIVFPALEARGKLKNISHAYTFDHKHEVEHLNKISRILDKMSGLHLSVSTIDSNIREKGMLRYHHLCRKLQEMCKSMHKLLSDHINREEIEIWPMIRKFFSNQEQGKIIGCMLGRIRAEILQDMMPWLMASLTQEEQHVLMFLWSMATKNTMFDEWLGEWWDGYSLTKVTEQSNDAPLQPVEPLEIISKYLSEEILNELQEESSANKSINFLQKDHIGDNVELSNYNFDDEVKVHDAEQNNQCSKCINQFHDNNKHACNVVTDITNPINNECKSSHLCDKSGRYDRLLKLSQDDLEMAIRRVSRDSCLDPQKKSYIIQNLLMSRWIVRQQISSTEVNIKNELEFPGKHPSYRDPLKLIHGCKHYKRNCKLFAPCCNQLHTCIHCHNEESDHSIDRKSITKMMCMKCLMIQPISATCSTVSCNLSMAKYYCRICKLFDDEREIYHCPYCNLCRVGKGLGVDYFHCMNCNACMSRSLMKHTCREKHLEDNCPICHEYIFTSCSPVKSLPCGHVMHSTCFQEYTCFNYTCPICSKSLGDMQVYFRMLDALLAEEKISDEILGQTQVILCNDCEKKGAGPFHWLYHKCPSCGSYNTRVL 1261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1306 1261 CDD Hr-like 614 760 - -
Ssu6g1306 1261 ProSiteProfiles Zinc finger RING-type profile. 1155 1197 IPR001841 -
Ssu6g1306 1261 Pfam CHY zinc finger 1027 1101 IPR008913 GO:0008270
Ssu6g1306 1261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1148 1199 IPR013083 -
Ssu6g1306 1261 Coils Coil 44 64 - -
Ssu6g1306 1261 Gene3D - 1226 1261 - -
Ssu6g1306 1261 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 25 1261 - -
Ssu6g1306 1261 SUPERFAMILY Zinc hairpin stack 1092 1147 IPR037275 -
Ssu6g1306 1261 Pfam Zinc-ribbon 1202 1259 IPR039512 -
Ssu6g1306 1261 SUPERFAMILY RING/U-box 1144 1201 - -
Ssu6g1306 1261 Gene3D nmb1532 protein domain like 32 191 - -
Ssu6g1306 1261 Gene3D nmb1532 protein domain like 608 779 - -
Ssu6g1306 1261 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 25 1261 - -
Ssu6g1306 1261 ProSiteProfiles Zinc finger CTCHY-type profile. 1091 1154 IPR017921 -
Ssu6g1306 1261 CDD Hr-like 40 171 - -
Ssu6g1306 1261 SUPERFAMILY CHY zinc finger-like 1018 1084 IPR037274 GO:0008270
Ssu6g1306 1261 Pfam Hemerythrin HHE cation binding domain 41 173 IPR012312 -
Ssu6g1306 1261 CDD RING-H2_Pirh2 1154 1197 - -
Ssu6g1306 1261 ProSiteProfiles Zinc finger CHY-type profile. 1020 1089 IPR008913 GO:0008270
Ssu6g1306 1261 SMART ring_2 1155 1196 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1306 Ssu-Chr6 21309718 21326020 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1306 32 855 C2H2 Transcription Factor Family AT3G18290 32.729 5.11e-130 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1306 K16276 - gmx:100802706 2329.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1306 6 21309718 21326020 Ssu6g1306 6 21309718 21326020 ECH