Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1305 ATGACCCTTAAGGGTGGCACAACCCAAGCCTGTGCGGCATGCAAACACCAGAGAAGAAAGTGCACTTCTGAGTGCCTTCTTGCACCATACTTCCCTGCAGACCAACCCAAGGTGTTTCTGAATGTCCACAAGCTATTTGGAGTGAGCAACATCGTAAAGATATTGAAGATATTGGAGCCTGGTCAGAAGAAAATAGCCATGGACTCTATCATTATTCAAGCAAACTATAGGGATAAGTACCCTGTGCATGGCTGTTGGGAGGAAATTTGTAGGCTACAATACCAAATATGGCTTGTGGAAGAGGAGCTTCATGGAGTTTATCAACAGCTTGAAATATGCAGGCAACAACAGCAGCAGCACCAAGGTCCTTCCATGCCTGATGACGTGACTTCACAATTAGAATTGGGCATGCCACCACGTACCAATAATGCACTCCCTCTATTTAATCATCATACTCCACAACCACACGCTTACAACACTGTGGCTGCTTTGTCTGTGTCACAGCAACATTCCTACTCCAACAGCAACAGCGTGGATTATAACTCCCTCTACTTGGATTCCAAGGATAACTCCACAAATCCTTTGTGGGTTCAGTACCCCTATGAAAATAACAACAGCAATTCTGTGGGAATGCAAACTCCGTTTGTTTCCTCACAGCCACTAGCCATCCAACAAAATCTTGTTGAAGATTATGATGAGATGAATCCAATTTTTGATTCAGTTGATGATAGACAATCATACATTTATTCCAAGGAGGCTTATGATTCAGAAGAATCACTGAAAGATATGAGAAAGTGCACTGAGCATGTTTCTGAGAATGAATTGAAGAGTGCTGCTGCATGCTTTAGCCTTACCAGTGTCAACTGA 867 0.4314 MTLKGGTTQACAACKHQRRKCTSECLLAPYFPADQPKVFLNVHKLFGVSNIVKILKILEPGQKKIAMDSIIIQANYRDKYPVHGCWEEICRLQYQIWLVEEELHGVYQQLEICRQQQQQHQGPSMPDDVTSQLELGMPPRTNNALPLFNHHTPQPHAYNTVAALSVSQQHSYSNSNSVDYNSLYLDSKDNSTNPLWVQYPYENNNSNSVGMQTPFVSSQPLAIQQNLVEDYDEMNPIFDSVDDRQSYIYSKEAYDSEESLKDMRKCTEHVSENELKSAAACFSLTSVN 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1305 288 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 261 - -
Ssu6g1305 288 PANTHER LOB DOMAIN-CONTAINING PROTEIN 27-RELATED 4 261 - -
Ssu6g1305 288 Pfam Lateral organ boundaries (LOB) domain 10 104 IPR004883 -
Ssu6g1305 288 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1305 Ssu-Chr6 21305843 21307026 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1305 1 253 AS2 family AT3G47870 38.111 3.53e-51 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu6g1305 LOB 2.2e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1305 6 21305843 21307026 Ssu6g1305 6 21305843 21307026 ECH