Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1304 ATGGGGCACAAAAAGCGAAACCCTGCTCCGCGTTCGAAACAACCTCCGGCGGCTTCTCTGGCGGCGCAATCCGCTGTCGGCGGAGCCGCCAACGGAGTCACCTCGCCGGACGCTGACGCCTGCAATGTTCCCGATCACAATCCGCACAACCCTAGCAAGATCGAATTGGCTCCTCCCCAAACCGAGGGTTCCGATTACTCCACCATCAAGCTCGAGTGCGAGCGCGCCCTCACCACGCATCGCCGCGGGAACCACACCAAGGCAATGAAGCTCCTGAAGGAGATTTGCGCCAGGGAGGAGGGTTTGCCTCACTCCGCCTTCGTCCACCGAGTCCACAGCCTCGTGTGTTTCAAAACGGCGACGGTTATCACCGACCCGAGCTCGAAGCAGCGGCATTTGAAGAATGCCGTCGAGTCGGCGCGGCGGGCGGTGGAGCTGACGCCGAATTCGGTCGAGTACGCGCATTTCCTTGCCACTGTGATGTTGGAGGCGGCGAGCGAAGGGAAGGATTATGAGGAGGTGGTGCACGAGTGCGAGAGGGGGCTCGCCATCGAGAACCCTAGTGATCCTGCGAAGGAGACATTGCAGGATGAGAGCGAGCAGAAAGCGTTGACGCCGGAAGAGCGGATAGCGCACGTGCAGAATGAGTTGAGGCAGCTTATTCAGAAGTCGAATATAGCTTCCTTGTCTTCCTGGATGAAGAATTTGAGTAATGGGGAGGAGAGGTTTCGGTTGATTCCAATAAGGAGGACCCCCGAGGACCCCATGGAGGTGAGGCTGGTTCAAACTAGGAGGCCTAATGAGATCAAGAAGGTGACCAAGACTCCCgaggagagaagaaaggaaATTGAAGTTCGAGTGGCTGCTGCTAGGCTGTTGCAGCAGAAGTCAGAGACGCCGCAATCGCCGAATGAAGGAGATAGGGATGACAGGCCGTTGGATTCGTCTGCAGGATCTGGTCAGAGGATTGGTGATAGGAGGAGGCATGGGAGTGCGAGAAAGAATGGGTTTACAGCTGAGAGGATGAAGAGGGTGCACTCATATTGGAATTCAGTGAGTATGGATATGAAGAAGGACTTTCTTAGGGTTAAAATTTGTGATCTCAAGTCACACTATGGGTCTTCAAAGGATACTTTGCCGAATGATATCTTGTCAGAAGCTTTGTCTTATGCTGAGGCCAATAAAACATGGAAATTCTGGCTTTGCTGCAACTGTGAAAAGAAAGATTCCAACCCGGATTCTCACAGGCATCATGTTGTGCAGGAACACATGGGGAGTCTCTCGCCACAAATGCAGAGACTTCTGCCCCAAAATGTTGATAGTGAATGGATTGAGATGATTCTTAATTGTTCTTGGAAGCCTCTGGATGTCCTAGCTGCTGTTAGAATGCTTGATAATAAAGCAAAGTTCAAAAGTTCATTATTTCCTGAGGATTTGTACTTGGATCATCATACTCCGGACTATAATGATTGTTTTAAAGATGCAAGCAGCTCTGACATTGAGAAGGAAAGTTCAGGGGACAGTCTTCGTAATTGTTTGGCAGAATGCAACAATCATtgtaaaattatagaaaatgatGTCAGAGGTGGTGTTGAAGACCAACTATCTATGGCTAATCCCATTATTGATTGTTGGCCGGTATCTGACGACTCTGAGCGTGCAAAACTTCTAGAGAAAATTCATTCCAGGTTTGAGATTCTTATTAGACACAAATGTCTTGCCGCAAGTCATCTTAACAAGGTCATACAGTTTACTATGGGTGAGATACAGGGTCTTGCTGCTGGTTCTCAACTTCTAAATCATGGCGTGGACCAAACACCAATGTGCATATGCTTTCTGGGAGCTTCACAGCTTAAGACAATTTTCCAATTTCTGCAGGAAATATCTCATGCTTGCGGGTTGGACAGGTATGCTGATAAAGGTAGTAGTCCAACAAATGATTTGGCCAATATCGGTCAAGGTCCTGAGATTAAAGACAAGATTGTACTTGATGGAGATGCATCATGTCTCCTTCTGGATGAGTGTTTACTGCAAACACAAGTTACTGCTGGTACTGCTCAGGGGGCTGTCTTGGATGATGTGACTACCCCAAGCTCTCCTAATGGAATTTCATGCTATAATGATGCTTTGCTATCCTGGATATTTTCAAGTTCACCTATTGGGGATCAATTGACATCATGGCTGCGGACcagagaagataaaataaataaaggaaaggaAATTGTCCAGATGCTTGAGAAGGAGTTTTATCACCTACAGGGCCTATGTGAGAAGAAGGGCGAGCGTATAAGTTATGAGGAAGCACTACAAACAGTAGAGGATCTTTGTCTCGAAGAAGGTAAGAAGAGGGAAACTGTTGGTGAATTTGTCCAGCGAAGCTATGAATCTGTCTTAAGAAAACGGAGAGAGGAGCTCATTGAGAGTGAGAATGATATGATGTATGTCAGCAATAGGTTTGAGTTGGATGCTATATCAAATGTTTTGCAAGAAGCAGAAGCAAGGAATGTTAATCAATTTGGCTATGAGGAAACTTATGCTGGCGTGACTTCTCAGTTATGTGACTTGGAATCTGGTGAAGAAGATGAATGGAGAATGAAAGACTACTTGCATCAAATGGATGGTTGTATAGAAAATGCTATTCAGAAACTGAAAGAGCATTTATCTATAGAGCTTAGCAAAATTGATGCTCGAATAATTAGAAGTTTTACAGAGATGCAGCAACTGGAATTCAAGATTGGGCCTATTTCTGCTAATGATTGTCGAGCAATATTAGTGCCTCTAGTGAAGTCGTACCTAAGGgCTCTTTTGGAAGATTTGGCTGAGAAGGATGCAAGAGAGAAGTCTGATGCTGCAAGTGAAGCATTTTTGGCTGAACTTGCTCTTGATTCCAAGAAGGCTGTTAAGGGGGGAAGTGAGAGCACAAGACATGTCGAGAAGACaaaagataagaagaagaataaagatCACAGAAAAGCAAGAGATTTGAAGGCCACAAGTGGTCATGTGCAATTCTCACTTCAATCTACAACTCCTGATTCCAATCTAGTTGCACCTGAAAGTGACTTCCCAGATCATGAGGTTGTTTCTATGAATGATGACGACTTGGAACAACTTGAAGAGGAATTTAGACGTAAAATTGAGCtagaagaggaggaaaaaaagCTTGAAGAAACTTTGGAATATCAACGAAGGATAGAAAATGAAGCCAAACAGAAGCACCTTGCAGAGCAACAAAAGAAATCATCTGCGTTATACTCAGATGAAGTGGTAGACAAACTTCAAGATTGTCAAACAAAGGTGGATGCTGATCCACCAGATGCACACAAACATGTGAGAGTTCCTGTGCAGGAGAAGTTGGTAAAGGAGAATGGAACTCGAAGCAATCTGGATGGTGTGCGTACACCCACAGCAAATGGTTCCATGGTTAATTATTTGCATCAGTCAAAAGTTAAACAATGTTGGTGGTTTGAGTgtctcaatttatttattctttgctTTAGGTTCtccacatttatttatttcatttttacagCACATCTGTCTAATGGAGTTGTTCCAGAGAATGGTCTACCTGATCGGCGTGCAGGAAAAAAACATAAACGGCAGAAGAATTCTTCCAGACTGGTTGATGGAAAGTTTGAATCTGTCCCATCAGAGAAAGAGAATATTGAGGATACACATACTGATTATCACTTAAGAGAGGAATTCAAATTTACTAACAATCAAGATGTTAACAATGTGTGGGAAAACAATGGATCAAAGGCAATGAGAGAGTTGCAAGTAGAAGATGCAGAGGAGGAAAGATTCCAAGCTGATCTTAAAATGGCTGTACGCCAAAGCCTGGACACATATCAAGCTCGTGGAAGTTTGCCTTCAGTTTCCAGTTTAAGAATGCCACAGAGAGCTTCTTCACAGGTAGATAGTGTGGATTGTCCGCCTGTGGAAGACTCAACTGATAATGTGAATGGGGCTACTTTGCTTGGTACTGGACTGAAGAATGAAGTGGGTGAATATAATTGTTTTCTCAATGTCATTATACAGTCACTGTGGCATTTAAGACGCTTTCGGGTGGAATTTCTTGGCAGATCAAGATCAGAGCATGATCATGTGGGTAATCCTTGCGTTGTCTGTGCATTGTATGAAATCTTTACTGCACTGGACATTGCATCAAAGGATTCAAGGAGAGAGGCAGTTGCACCTACATCCCTGCGGATAGCTCTAAGCAACCTGTATCCTCACAGTAATTTCTTCCAGGAGGCTCAGATGAATGATGCTTCTGAGGTACTGGCAGTGATATTTGACTGCCTTCATCGATCATTTACTTGTGGTTCAAGTGTTTCTGATGCAGAATCAGCTGAAAGCAACTGCATGGGATCTTGGGATTGTGCAAATGGTAGTTGTATAGCACATTCACTTTTTGGAATGAACATTTTTGAACAAATGAACTGCTATCACTGTGGTCTTGAATCCAGACATATGAAATATACTTCATTCTTTCACAATATAAATGCCAGTGCCCTCCGAACAATGAAGGTAATGTCTGCTGAAGCTTCCTTTGATAAACTTTTGAATCTTGTGGAGTTGAACCATCAGTTGGCTTGTGATCTAGAAGCTGGTGGCTGTGGCAAGCTCAACCACATCCATCACTTTCTTTCAACTCCACCTCATGTTTTTATGACAGTCCTAGGTTGGCAAAATACATGTGAGAGTGCTGATGATATAACTGCTACTCTGACAGCCCTGAGCACCAAGATTGATATCAGTGTCCTTTATCGTGGTTTAGATCGATACATCCATAACTTGGTGTCAGTGGTTTGCTACTATGGTCAGCATTATCATTGCTTTGCTTATAGCCATGACCATGAACAGTGGATTATGTATGATGACAAGACTGTCAAGGTAATTGGGGGATGGGCGGATGTTCTTACAATGTGTGAAAGAGGGCATCTACAACCTCAGGTTCTTTTCTTTGAAGCTGTAAACTAG 4986 0.4316 MGHKKRNPAPRSKQPPAASLAAQSAVGGAANGVTSPDADACNVPDHNPHNPSKIELAPPQTEGSDYSTIKLECERALTTHRRGNHTKAMKLLKEICAREEGLPHSAFVHRVHSLVCFKTATVITDPSSKQRHLKNAVESARRAVELTPNSVEYAHFLATVMLEAASEGKDYEEVVHECERGLAIENPSDPAKETLQDESEQKALTPEERIAHVQNELRQLIQKSNIASLSSWMKNLSNGEERFRLIPIRRTPEDPMEVRLVQTRRPNEIKKVTKTPEERRKEIEVRVAAARLLQQKSETPQSPNEGDRDDRPLDSSAGSGQRIGDRRRHGSARKNGFTAERMKRVHSYWNSVSMDMKKDFLRVKICDLKSHYGSSKDTLPNDILSEALSYAEANKTWKFWLCCNCEKKDSNPDSHRHHVVQEHMGSLSPQMQRLLPQNVDSEWIEMILNCSWKPLDVLAAVRMLDNKAKFKSSLFPEDLYLDHHTPDYNDCFKDASSSDIEKESSGDSLRNCLAECNNHCKIIENDVRGGVEDQLSMANPIIDCWPVSDDSERAKLLEKIHSRFEILIRHKCLAASHLNKVIQFTMGEIQGLAAGSQLLNHGVDQTPMCICFLGASQLKTIFQFLQEISHACGLDRYADKGSSPTNDLANIGQGPEIKDKIVLDGDASCLLLDECLLQTQVTAGTAQGAVLDDVTTPSSPNGISCYNDALLSWIFSSSPIGDQLTSWLRTREDKINKGKEIVQMLEKEFYHLQGLCEKKGERISYEEALQTVEDLCLEEGKKRETVGEFVQRSYESVLRKRREELIESENDMMYVSNRFELDAISNVLQEAEARNVNQFGYEETYAGVTSQLCDLESGEEDEWRMKDYLHQMDGCIENAIQKLKEHLSIELSKIDARIIRSFTEMQQLEFKIGPISANDCRAILVPLVKSYLRALLEDLAEKDAREKSDAASEAFLAELALDSKKAVKGGSESTRHVEKTKDKKKNKDHRKARDLKATSGHVQFSLQSTTPDSNLVAPESDFPDHEVVSMNDDDLEQLEEEFRRKIELEEEEKKLEETLEYQRRIENEAKQKHLAEQQKKSSALYSDEVVDKLQDCQTKVDADPPDAHKHVRVPVQEKLVKENGTRSNLDGVRTPTANGSMVNYLHQSKVKQCWWFECLNLFILCFRFSTFIYFIFTAHLSNGVVPENGLPDRRAGKKHKRQKNSSRLVDGKFESVPSEKENIEDTHTDYHLREEFKFTNNQDVNNVWENNGSKAMRELQVEDAEEERFQADLKMAVRQSLDTYQARGSLPSVSSLRMPQRASSQVDSVDCPPVEDSTDNVNGATLLGTGLKNEVGEYNCFLNVIIQSLWHLRRFRVEFLGRSRSEHDHVGNPCVVCALYEIFTALDIASKDSRREAVAPTSLRIALSNLYPHSNFFQEAQMNDASEVLAVIFDCLHRSFTCGSSVSDAESAESNCMGSWDCANGSCIAHSLFGMNIFEQMNCYHCGLESRHMKYTSFFHNINASALRTMKVMSAEASFDKLLNLVELNHQLACDLEAGGCGKLNHIHHFLSTPPHVFMTVLGWQNTCESADDITATLTALSTKIDISVLYRGLDRYIHNLVSVVCYYGQHYHCFAYSHDHEQWIMYDDKTVKVIGGWADVLTMCERGHLQPQVLFFEAVN 1661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1304 1661 MobiDBLite consensus disorder prediction 302 338 - -
Ssu6g1304 1661 Pfam Protein of unknown function (DUF629) 344 878 IPR006865 -
Ssu6g1304 1661 MobiDBLite consensus disorder prediction 967 1016 - -
Ssu6g1304 1661 Pfam Protein of unknown function (DUF627) 76 186 IPR006866 -
Ssu6g1304 1661 CDD Peptidase_C19 1420 1658 - -
Ssu6g1304 1661 MobiDBLite consensus disorder prediction 1 65 - -
Ssu6g1304 1661 PANTHER INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE 1 1089 - -
Ssu6g1304 1661 PANTHER INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE 1180 1661 - -
Ssu6g1304 1661 MobiDBLite consensus disorder prediction 292 338 - -
Ssu6g1304 1661 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1089 - -
Ssu6g1304 1661 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1180 1661 - -
Ssu6g1304 1661 Gene3D Cysteine proteinases 1317 1661 - -
Ssu6g1304 1661 Gene3D Tetratricopeptide repeat domain 57 220 IPR011990 GO:0005515
Ssu6g1304 1661 MobiDBLite consensus disorder prediction 1000 1016 - -
Ssu6g1304 1661 Coils Coil 1031 1068 - -
Ssu6g1304 1661 Pfam Ubiquitin carboxyl-terminal hydrolase 1330 1637 IPR001394 GO:0004843|GO:0016579
Ssu6g1304 1661 MobiDBLite consensus disorder prediction 1186 1209 - -
Ssu6g1304 1661 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1329 1660 IPR028889 -
Ssu6g1304 1661 SUPERFAMILY Cysteine proteinases 1329 1658 IPR038765 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1304 65 1658 C2H2 Transcription Factor Family AT3G47890 56.471 0.0 1693
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1304 - - gmx:100799759 2878.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1304 6 21282522 21290863 Ssu6g1304 6 21282522 21290863 ECH