Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1302 ATGGGGAACTGCAACGCGTGCGTGAGAGCCGACGCGGCAGAGTCAAACCGAGGAAGAAAACAGAAAACCAAACCGAACCCATACGCGGAAGATGGGGTGCGTTCGGGCGTGCCGATCCGGGTGCTGAAGGGCGTGACGTCGCGGAGCCTCATCGGCGACAAGTACGTGATAGGTCGGGAGCTAGGTCGGGGCGAGTTCGGGATAACGTACCTGTGCACGGACCGGGAGACGAAGCAGGAGCTGGCGTGCAAGTCGATCTCGAAGCGGAAGCTGCGGACGGCGGTGGACGTGGAGGACGTGCGGCGCGAGGTGGCCATCATGTCGACGCTACCGGAGCACCCCAACGTGGTGAGGCTGAGGGCGACCTACGAGGACGAGGAGAACGTTCACCTCGTCATGGAGCTCTGCGCGGGCGGGGAGCTCTTCGACCGGATCGTCGCACGCGGGCATTACTCCGAGCGTGCGGCGGCTCACGTGGCCAGAACCATCGCTGAGGTTGTCAGAATGTGTCACGCGAATGGCGTCATGCATAGGGACCTTAAGCCCGAGAATTTCCTCTTCGCGAATAAGAAGGAGAACTCCGTTCTTAAGGCCATTGACTTTGGACTCTCCGTTTTTTTCAGGCCCGGGGAGAGGTTTTCGGAGATTGTGGGGAGTCCTTACTATATGGCGCCAGAGGTGTTGAAGAGGAATTATGGGCCGGAGGTGGATGTGTGGAGTGCTGGGGtgattctttatattttattatgcggGGTTCCTCCATTTTGGGCAGAGGATGAACGAGGGGTGGCTTTGGCCATTTTGAGGGGAGTGATCGACTTCAAGAGGGAACCGTGGCCTCAGATTTCGGATAGTGCTAAGAGCCTTGTGCGCCAGATGCTGGAGCCGGATCCCAAAAAGCGCTTGACGGCTGAACAGGTGCTTGAACATTCCTGGTTACAAAATGCAAAGAAAGCTTCAAATGTTCCATTAGGAGATATTGTGAGGACAAGGCTTAAGCAGTTCTCTGTGATGAATAGATTCAAAAAGAGAGCACTTCGGGTAATTGCAGAGCATTTGTCTGTTGAAGAGGTAGAAATAATCAAAGACATGTTTACATTGATGGATACCGACAAAGATGGCAATGTAACATACGAGGAACTGAAGGTTGGGTTACGGAAGGTTGGTTCACAATTGGCTGAGCCAGAGATACAGATGCTGATGGAAGTGGCTGATGTTGATGGGAATGGAGTACTTGACTATGGAGAGTTTGTAGCCGTGACAATTCACTTGCAAAGAATGGAGAATGATGAGCATTTCCGCAAAGCATTCATGTATTTTGACAAAGATGGGAGTGGGTACATTGAATTAGGTGAGCTAGAGAAAGCATTAGTAGATGAGTCGGGAGAAACTGATACTACTGTATTGAATGACATCATGCGCGAAGTTGACACTGACAAGGATGGTCGCATCAGTTATGAAGAGTTTGTGGCCATGATGAAAACTGGAACTGACTGGAGAAAAGCATCTAGGCAGTATTCAAGGGAGAGATTCAAGAGCCTGAGCATAAATTTGATGAAGGATGGCTCACTTCAGCTTCATGATGGTATTAGTGGTCAAGCTGTAGTGGTTTGA 1614 0.5081 MGNCNACVRADAAESNRGRKQKTKPNPYAEDGVRSGVPIRVLKGVTSRSLIGDKYVIGRELGRGEFGITYLCTDRETKQELACKSISKRKLRTAVDVEDVRREVAIMSTLPEHPNVVRLRATYEDEENVHLVMELCAGGELFDRIVARGHYSERAAAHVARTIAEVVRMCHANGVMHRDLKPENFLFANKKENSVLKAIDFGLSVFFRPGERFSEIVGSPYYMAPEVLKRNYGPEVDVWSAGVILYILLCGVPPFWAEDERGVALAILRGVIDFKREPWPQISDSAKSLVRQMLEPDPKKRLTAEQVLEHSWLQNAKKASNVPLGDIVRTRLKQFSVMNRFKKRALRVIAEHLSVEEVEIIKDMFTLMDTDKDGNVTYEELKVGLRKVGSQLAEPEIQMLMEVADVDGNGVLDYGEFVAVTIHLQRMENDEHFRKAFMYFDKDGSGYIELGELEKALVDESGETDTTVLNDIMREVDTDKDGRISYEEFVAMMKTGTDWRKASRQYSRERFKSLSINLMKDGSLQLHDGISGQAVVV 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1302 537 PANTHER SERINE/THREONINE-PROTEIN KINASE 19 513 - -
Ssu6g1302 537 Gene3D Transferase(Phosphotransferase) domain 1 141 321 - -
Ssu6g1302 537 PANTHER BNAA09G44420D PROTEIN 19 513 - -
Ssu6g1302 537 CDD STKc_CAMK 54 312 - -
Ssu6g1302 537 Gene3D Phosphorylase Kinase; domain 1 56 140 - -
Ssu6g1302 537 ProSitePatterns EF-hand calcium-binding domain. 369 381 IPR018247 -
Ssu6g1302 537 ProSiteProfiles EF-hand calcium-binding domain profile. 392 427 IPR002048 GO:0005509
Ssu6g1302 537 ProSiteProfiles EF-hand calcium-binding domain profile. 356 391 IPR002048 GO:0005509
Ssu6g1302 537 ProSiteProfiles Protein kinase domain profile. 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1302 537 ProSiteProfiles EF-hand calcium-binding domain profile. 464 499 IPR002048 GO:0005509
Ssu6g1302 537 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Ssu6g1302 537 ProSitePatterns Protein kinases ATP-binding region signature. 61 84 IPR017441 GO:0005524
Ssu6g1302 537 ProSitePatterns EF-hand calcium-binding domain. 405 417 IPR018247 -
Ssu6g1302 537 MobiDBLite consensus disorder prediction 14 33 - -
Ssu6g1302 537 SUPERFAMILY Protein kinase-like (PK-like) 51 321 IPR011009 -
Ssu6g1302 537 Gene3D - 322 497 - -
Ssu6g1302 537 SMART serkin_6 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1302 537 ProSitePatterns EF-hand calcium-binding domain. 441 453 IPR018247 -
Ssu6g1302 537 Pfam EF-hand domain pair 431 494 IPR002048 GO:0005509
Ssu6g1302 537 Pfam EF-hand domain pair 361 420 IPR002048 GO:0005509
Ssu6g1302 537 ProSitePatterns EF-hand calcium-binding domain. 477 489 IPR018247 -
Ssu6g1302 537 SUPERFAMILY EF-hand 341 520 IPR011992 -
Ssu6g1302 537 SMART efh_1 396 424 IPR002048 GO:0005509
Ssu6g1302 537 SMART efh_1 360 388 IPR002048 GO:0005509
Ssu6g1302 537 SMART efh_1 432 460 IPR002048 GO:0005509
Ssu6g1302 537 SMART efh_1 468 496 IPR002048 GO:0005509
Ssu6g1302 537 ProSiteProfiles EF-hand calcium-binding domain profile. 428 463 IPR002048 GO:0005509
Ssu6g1302 537 CDD EFh 432 494 IPR002048 GO:0005509
Ssu6g1302 537 Pfam Protein kinase domain 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1302 Ssu-Chr6 21224951 21228248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1302 1 537 EF-hand Containing Proteins AT1G74740 78.413 0.0 896
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Ssu6g1302 Pkinase 6.3e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1302 K13412 - gmx:100800559 1018.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1302 6 21224951 21228248 Ssu6g1302 6 21224951 21228248 ECH