Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1297 ATGGGAGATTGGGAACTGAAAATGGGCACTGTAGCATGTATTTCCTTGGTGATTATGACAACAGTTTTCTGCCCTTCCTCTCTTGCTCTCACCATGGATGGTCTGACGTTGTTGGAAATCAAAAGCACTTTGAATGATACGAAGAATGTTCTGAGCAACTGGCAAGAGTTTGATGAGTCTCCTTGTGCATGGACTGGTATCTCTTGTCATCCAGGTGATGAGCAAAGAGTTCGCTCCATAAATCTGCCATACATGCAACTTGGAGGGATTATTTCTCCCAGCATTGGTAAACTCAGTAGACTACAGAGATTGGCACTTCATCAGAACAGTTTTCACGGAACCATTCCTAATGAAATTACCAATTGTACTGAGCTAAGAGCGCTGTACTTGAGGGGTAATTATTTCCAAGGAGGCATACCATCAAATATTGGAAAtctttcatatttaaatatactGGATTTATCAAGTAACTCATTAAAAGGTGCTATACCTTCCTCTATTGGCCGTCTCTCACATTTGCAAATTCTGAACTTGTCTACCAATTTCTTTTCCGGTGAAATACCTGACATTGGAGTATTAAGCACCTTTGACAAGAGCTCGTTTATTGGCAATTTAGATCTTTGTGGGCGGCAAGTTCAAAAGCCATGTCGAACATCACTTGGTTTCCCTGTGGTGCTACCACATGCGGAAAGTGATGAAGCTGCAGTCCCTACCAAAAGGTCTTCACATTACATGAAGTGGGTGCTAATTGGTGCAATGGCAACTTTGGGTCTTGCACTTGTCATAATCCTTTCATTCCTCTGGACTCGTTTGTTATCAAAGAAGGAACGAGCCGCAAAGAGATACACAGAAGTCAAGAAACAAGTTGATCCAGAAGCAAGCACAAAACTTATTACCTTCCATGGTGATCTGCCATACACATCATCTGAGATCATAGAGAAGCTGGAGTCTCTTGATGAAGGGGATATAGTAGGATCAGGAGGATTTGGTACTGTTTACCGAATggtgatgaatgattgtggtacATTTGCTGTTAAACGGATTGATCGAAGTTGTGAAGGGTCTGATCAAGTGTTTGAAAGGGAACTAGAGATCTTGGGGAGCATCAAGCACATAAATTTAGTAAATCTGCGTGGTTACTGCAGGCTCCCTTCTTCAAGGCTCCTTATCTATGATTATTTGGCCTTAGGCAGCTTAGATGATCTCTTGCATGAAAATACTGAACAACGACGACTACTGAATTGGAGTGATCGCCTAAAGATAGCTCTTGGTTCTGCACGGGGTTTGGCATACTTGCACCATGAATGCAGCCCAAAAATTGTTCACCGTGACATAAAATCCAGCAACATCCTGCTTGATGAAGGCATGGAGCCGCATATATCTGATTTTGGTCTGGCAAAGCTTTTGGTTGATGAAGAGGCCCATGTTACCACAGTGGTTGCTGGCACATTTGGTTATTTGGCACCAGAGTATCTGCAAAGTGGGAGAGCAACTGAGAAGTCAGATGTATATAGCTTTGGAGTTTTGTTGTTGGAACTTGTAACTGGAAAGAGGCCTACAGATCCTTCCTTTGTAAAAAGAGGCTTAAATGTTGTTGGTTGGACGAACATGTTACTGAGAGAAAACAGATTGGAAGACATTGTAGACAAAAGATGCACTGATGCTGATGCAGGAACTCTTGAAGCAATTCTTGAGCTGGCAGCAAGATGCACTGATGGAAATGCGGATGAACGTCCATCAATGAACCAGGTGCTTCAGTTGCTGGAACAAGAGGTCATGTCTCCTTGCCCAAGCGAGTTTTATGAGTCTCATTCAGATCACTAA 1824 0.4183 MGDWELKMGTVACISLVIMTTVFCPSSLALTMDGLTLLEIKSTLNDTKNVLSNWQEFDESPCAWTGISCHPGDEQRVRSINLPYMQLGGIISPSIGKLSRLQRLALHQNSFHGTIPNEITNCTELRALYLRGNYFQGGIPSNIGNLSYLNILDLSSNSLKGAIPSSIGRLSHLQILNLSTNFFSGEIPDIGVLSTFDKSSFIGNLDLCGRQVQKPCRTSLGFPVVLPHAESDEAAVPTKRSSHYMKWVLIGAMATLGLALVIILSFLWTRLLSKKERAAKRYTEVKKQVDPEASTKLITFHGDLPYTSSEIIEKLESLDEGDIVGSGGFGTVYRMVMNDCGTFAVKRIDRSCEGSDQVFERELEILGSIKHINLVNLRGYCRLPSSRLLIYDYLALGSLDDLLHENTEQRRLLNWSDRLKIALGSARGLAYLHHECSPKIVHRDIKSSNILLDEGMEPHISDFGLAKLLVDEEAHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPSFVKRGLNVVGWTNMLLRENRLEDIVDKRCTDADAGTLEAILELAARCTDGNADERPSMNQVLQLLEQEVMSPCPSEFYESHSDH 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1297 607 PANTHER RECEPTOR-LIKE PROTEIN 55 7 607 - -
Ssu6g1297 607 Pfam Protein kinase domain 321 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1297 607 SUPERFAMILY L domain-like 33 209 - -
Ssu6g1297 607 PANTHER LRR RECEPTOR-LIKE KINASE 7 607 - -
Ssu6g1297 607 Gene3D Ribonuclease Inhibitor 31 218 IPR032675 -
Ssu6g1297 607 ProSitePatterns Protein kinases ATP-binding region signature. 324 346 IPR017441 GO:0005524
Ssu6g1297 607 SUPERFAMILY Protein kinase-like (PK-like) 300 589 IPR011009 -
Ssu6g1297 607 Gene3D Transferase(Phosphotransferase) domain 1 394 598 - -
Ssu6g1297 607 SMART serkin_6 318 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1297 607 Pfam Leucine rich repeat N-terminal domain 32 69 IPR013210 -
Ssu6g1297 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672|GO:0006468
Ssu6g1297 607 Gene3D Phosphorylase Kinase; domain 1 278 393 - -
Ssu6g1297 607 ProSiteProfiles Protein kinase domain profile. 318 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1297 Ssu-Chr6 21040148 21044348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1297 29 597 Receptor kinase-like Gene Family AT2G35620 50.615 0.0 559
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Ssu6g1297 Pkinase 9.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1297 - - gmx:100803920 1139.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1297 6 21040148 21044348 Ssu6g1297 6 21040148 21044348 ECH