Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1295 ATGGCGGGTGGAAGGGCCTTTTCCAACATCACTAGTTTCCTTCGCAACCAAACTGCTCCTCTCGattctctcttcctctcttccTCTCTTCCTTTCCCCGGCTCGAGATCCATGGTGAGTTTCGAAGGAGAAGGAGGGAAGGGGTGTAACGGGTCCTTCTTCCGCGCGTTTGATACGGACGAGAACGGGGATGAGTGCGTGGACGAGTACTTTCACCAACCGGAGAAGAAGCGGCGTCTCTCCGCGGACCAGGTTCAGTTTCTCGAGAAGAGCTTCGAGGAGGAGAACAAGCTCGAACCCGACAGGAAAACCAAGCTTGCCAAAGACCTTGGTTTGCAGCCGCGACAAGTCGCTATTTGGTTCCAGAACCGTCGAGCGAGGTGGAAGACCAAACAGCTGGAGAAGGATTACGAGACTCTGCATGCAAGCTATGAGAGTCTCAAGACCAACTACGACAGCCTCCTCAGAGAGAAAGACATGTTAAAAGCCGAGGTGGCGAGCCTGGGTGAGAAGGTGCTTGCAAGGGGGAAACAGGAGGGAGAGTTGAAGCAGGCTGAAAGTGAACCGCCCCAAAGGCCTTTACTCGATTCAATTTCGGAGGGTGAAGGATCCAAAGTCTCCGTTGTTGGGGGTTGTAAACAGGAAGATATTAGTTCAGCCAGGAGTGACATTTTGGATTCTGATAGCCCACATTACACGGATGGAGTTCACTCTGCACTGCTAGAGTCAGGTGATGCCTCTTACGTGTTTGAGCCTGATCAATCGGACCAGTCACAAGATGAAGAAGATAACCTCAGCAAGAGTCTGTACCCTTCGTACCTCTTTCCCAAACTTGAGGACGTGGATTACTCCGACCCGCCTGAAAGTTCTTGTAATTTTGGATTTCCGGAGGAAGATCATGCCCTTTGGACCTGGGCGTACTAA 924 0.5065 MAGGRAFSNITSFLRNQTAPLDSLFLSSSLPFPGSRSMVSFEGEGGKGCNGSFFRAFDTDENGDECVDEYFHQPEKKRRLSADQVQFLEKSFEEENKLEPDRKTKLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYETLHASYESLKTNYDSLLREKDMLKAEVASLGEKVLARGKQEGELKQAESEPPQRPLLDSISEGEGSKVSVVGGCKQEDISSARSDILDSDSPHYTDGVHSALLESGDASYVFEPDQSDQSQDEEDNLSKSLYPSYLFPKLEDVDYSDPPESSCNFGFPEEDHALWTWAY 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1295 307 CDD homeodomain 76 132 IPR001356 GO:0003677
Ssu6g1295 307 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-54 23 304 - -
Ssu6g1295 307 ProSitePatterns 'Homeobox' domain signature. 106 129 IPR017970 GO:0000981|GO:0006355
Ssu6g1295 307 Pfam Homeodomain 76 129 IPR001356 GO:0003677
Ssu6g1295 307 Pfam Homeobox associated leucine zipper 131 172 IPR003106 GO:0006355|GO:0043565
Ssu6g1295 307 PRINTS Lambda-repressor HTH signature 102 111 IPR000047 GO:0003677
Ssu6g1295 307 PRINTS Lambda-repressor HTH signature 111 127 IPR000047 GO:0003677
Ssu6g1295 307 MobiDBLite consensus disorder prediction 244 266 - -
Ssu6g1295 307 Gene3D - 79 129 - -
Ssu6g1295 307 ProSiteProfiles 'Homeobox' domain profile. 71 131 IPR001356 GO:0003677
Ssu6g1295 307 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 23 304 IPR045224 GO:0003700
Ssu6g1295 307 Coils Coil 130 171 - -
Ssu6g1295 307 SMART HOX_1 74 135 IPR001356 GO:0003677
Ssu6g1295 307 MobiDBLite consensus disorder prediction 179 206 - -
Ssu6g1295 307 SUPERFAMILY Homeodomain-like 62 133 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1295 Ssu-Chr6 21021865 21023062 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1295 34 238 Homeobox Transcription Factor Family AT3G01470 45.455 4.74e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu6g1295 Homeodomain 5.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1295 - - gmx:100799054 499.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1295 6 21021865 21023062 Ssu6g1295 6 21021865 21023062 ECH