Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1287 atgaattcTTCCCACGATTTCATTCCAAGTCTGTTACGGAAACCCATGCTATCTCCATGTGTTATTAAGACCTGGTGTGTTCAATCATTATCATTTGCCACCGAAGAAGCAGAAGAGATATCAGGTTCTAGGCCTGCTGAAGTTTTGAACTTGGTGCAAGGTAAATGGGTAGGATCTTCAAACTGGAATACAGTTGTGGATCCTTTAAATGGAGACTCATTTATTAAAGTTGCTGAAGTTGATGAAACAGGCATTCAGCCCTTTGTGGAAAGCTTGTCCAGCTGTCCCAAACATGGTGTACACAATCCTTTTAAGGCACCAGAGAGATATCTCATGTTTGGAGAGATATCTGCTAAGGCAGCTCACATGCTATCTCTTCCCAAGGTTTCGGATTTTTTTACAAGGTTAATACAAAGAGTTTCTCCAAAAAGTTACCAGCAGGCATTTGGGGAAGTCTATGTGACACAAAAGTTTCTAGAGAATTTTTGCGGAGATCAGGTTCGTTTCCTGGCAAGGTCTTTTGGTGTACCTGGAAATCATCTTGGACAACAAAGTCATGGTTTTCGTTGGCCATATGGTCCTGTGGCAATTATTACTCCTTTTAATTTTCCCTTGGAGATTCCCGTCCTTCAATTGATGGGCGCACTTTATATGGGCAACAAGCCAGTTCTTAAAGTGAGCATTGTTATGGAACAAATGTTGCACCTGCTTCATACCTGTGGCTTACCTGTAGAAGATGTAGACTTCATAAATTCTGATGGGAGGACAATGAATAAGCTGTTGATGGAGGCAAATCCACGAATGACCCTTTTTACTGGTAGTTCAAGAGTGGCAGAGAAGTTGGCTGTTGATTTGAAGGGCCGCGTTAAATTAGAAGATGCTGGATTTGACTGGAAAATACTGGGCCCTGATGTCCATCAgGAAGATTACATAGCGTGGGTCTGTGATCAGGATGCATACGCATGCAGTGGTCAGAAATGCTCGGCACAATCATTGTTATTTATGCATGAGAACTGGTCTAAAACTTCCTTGCTATCTAAGTTGAAAGATCTTGCTGAGAGAAGAAAGCTAGAAGACTTGACAATCGGCCCAGTCCTCACAGAAGTTATTGGTAAATCAGTAAATGGCACTACTTATGCTGGTTTAAGAGCAAGGACAACCGGAGCTCCCCAGAATCATTgGTTTGGACCTGCTGGTGACGCTAGAGGTGCAGGAATTGGAACACCGGAGGCTATAAAACTTGTTTGGTCTTGCCACAgagaaattatatatgattttgggCCTGTGCCCAAGGATTGGAAAATTCCTGCATCCACTTGA 1320 0.4182 MNSSHDFIPSLLRKPMLSPCVIKTWCVQSLSFATEEAEEISGSRPAEVLNLVQGKWVGSSNWNTVVDPLNGDSFIKVAEVDETGIQPFVESLSSCPKHGVHNPFKAPERYLMFGEISAKAAHMLSLPKVSDFFTRLIQRVSPKSYQQAFGEVYVTQKFLENFCGDQVRFLARSFGVPGNHLGQQSHGFRWPYGPVAIITPFNFPLEIPVLQLMGALYMGNKPVLKVSIVMEQMLHLLHTCGLPVEDVDFINSDGRTMNKLLMEANPRMTLFTGSSRVAEKLAVDLKGRVKLEDAGFDWKILGPDVHQEDYIAWVCDQDAYACSGQKCSAQSLLFMHENWSKTSLLSKLKDLAERRKLEDLTIGPVLTEVIGKSVNGTTYAGLRARTTGAPQNHWFGPAGDARGAGIGTPEAIKLVWSCHREIIYDFGPVPKDWKIPAST 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1287 439 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 320 331 IPR016160 GO:0016491
Ssu6g1287 439 PANTHER DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE 12A1, MITOCHONDRIAL 367 438 - -
Ssu6g1287 439 PANTHER DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE 12A1, MITOCHONDRIAL 25 367 - -
Ssu6g1287 439 SUPERFAMILY ALDH-like 50 369 IPR016161 GO:0016491
Ssu6g1287 439 PANTHER ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE 25 367 IPR044638 GO:0004029
Ssu6g1287 439 PANTHER ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE 367 438 IPR044638 GO:0004029
Ssu6g1287 439 Pfam Aldehyde dehydrogenase family 63 368 IPR015590 GO:0016491
Ssu6g1287 439 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 46 316 IPR016162 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1287 Ssu-Chr6 20915730 20923500 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1287 366 439 Aldehyde Dehydrogenase Gene Family AT5G62530 85.135 1.24e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1287 K00294 - gmx:100813821 656.366