Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1286 ATGTATTCTCCAAGCAATGCTGAATTGGGTTGGTCTCGAGGACTTTGGATTGGTTTGAGCAAACATAGGAATACCTATAAAGATattctgatgcttaaGTGCATTCATTCATTACCATTTGCAACTGTAGAAGCAGAAGAGATATCAGGTTCTAGGCCTGCTGAAATTTTGAACCTGGTGCAAGGTAAGTGGGTAGGATCATCAAACTGGAGTACAGTTGTGGATCCTTTAAATGGAGACTCATTTATTAAAGTTGCCGAAGTTGACGAAACAGGCATTCAGGTGCATCCCCCCTTTGTGAAAAGCTTGTCCAGCTGTCCCAAACATGGTGTACACAATCCTTTTAAGGCACCAGAGAGATATCTCATGTTTGGAGAGATATCTGCTAAGGCAGCTCACATGCTATCACTTCCCAAGGTTTCGGATTTCTTTACAAGGATAATACAAAGAGTTTCTCCAAAGAGTTACCAGCAGGCTTTTGGGGAAGTCTATGTGACACAAAAGTTTCTAGAGAATTTTTGCGGAGATCAGGTTCGTTTCCTGGCAAGGTCTTTTGGTGTACCTGGAAATCATCTTGGACAACAAAGTCATGGTTTTCGTTGGCCATATGGTCCCGTGGCAATTATTACTCCTTTTAATTTTCCCTTAGAGATTCCTGTACTTCAGTTGATGGGTGCACTTTATATGGGCAACAAGCCAGTCCTTAAAGTTGATAGCAAGGTGAGCATTGTTATGGAACAAATGTTGCGCCTGCTTCATACCTGTGGCTTACCTGTAGAAGATGTAGACTTCATAAATTCTGATGGGAAGACAATGAACAAGCTGTTACTGGAGGCAAATCCACGAATGACCCTTTTTACTGGTAGTTCAAGAGTGGCAGAGAAGTTGGCTGTTGATTTGAAGGGCCGCGTTAAATTGGAAGATGCTGGATTTGACTGGAAAATACTGGGCCCTGATGTCCATCAgGAAGACTACATAGCGTGGGTCTGTGATCAGGATGCATACGCATGCAGTGGTCAGAAATGCTCGGCACAATCACTGTTATTTATACATGAGAACTGGTCTAAAACTTCCTTGCTATCTAAGTTGAAAGATCTTGCTGAGAGAAGAAAGCTGGCAGACTTGACAATTGGGCCAGTCCTCACAGAAGTCATTGGCAAATCAGTAAATGGTACTACTTATGCTGGTTTAAGAGCAAGGACAACCGGAGCTCCACAGAATCACTGGTTTGGACCTGCTGGTGATGCTAGAGGTGCAGGAATTGGAACACCAGAGGCTATAAAACTTGTATGGTCTTGCCACAGAGAAATTATCTATGATTTTGGGCCTGTGCCAAAGAATTGGGAAATTCCTCCATCTACTTGA 1365 0.4249 MYSPSNAELGWSRGLWIGLSKHRNTYKDILMLKCIHSLPFATVEAEEISGSRPAEILNLVQGKWVGSSNWSTVVDPLNGDSFIKVAEVDETGIQVHPPFVKSLSSCPKHGVHNPFKAPERYLMFGEISAKAAHMLSLPKVSDFFTRIIQRVSPKSYQQAFGEVYVTQKFLENFCGDQVRFLARSFGVPGNHLGQQSHGFRWPYGPVAIITPFNFPLEIPVLQLMGALYMGNKPVLKVDSKVSIVMEQMLRLLHTCGLPVEDVDFINSDGKTMNKLLLEANPRMTLFTGSSRVAEKLAVDLKGRVKLEDAGFDWKILGPDVHQEDYIAWVCDQDAYACSGQKCSAQSLLFIHENWSKTSLLSKLKDLAERRKLADLTIGPVLTEVIGKSVNGTTYAGLRARTTGAPQNHWFGPAGDARGAGIGTPEAIKLVWSCHREIIYDFGPVPKNWEIPPST 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1286 454 PANTHER ALDEHYDE/HISTIDINOL DEHYDROGENASE-RELATED 383 453 - -
Ssu6g1286 454 PANTHER ALDEHYDE/HISTIDINOL DEHYDROGENASE-RELATED 24 382 - -
Ssu6g1286 454 Pfam Aldehyde dehydrogenase family 131 383 IPR015590 GO:0016491
Ssu6g1286 454 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 50 312 IPR016162 GO:0016491
Ssu6g1286 454 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 335 346 IPR016160 GO:0016491
Ssu6g1286 454 SUPERFAMILY ALDH-like 58 384 IPR016161 GO:0016491
Ssu6g1286 454 PANTHER ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE 383 453 IPR044638 GO:0004029
Ssu6g1286 454 PANTHER ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE 24 382 IPR044638 GO:0004029
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1286 Ssu-Chr6 20886834 20901743 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1286 381 454 Aldehyde Dehydrogenase Gene Family AT5G62530 87.838 4.25e-40 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1286 K00294 - gmx:100813821 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1286 6 20886834 20901743 Ssu6g1286 6 20886834 20901743 ECH