LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu6g1285	ATGGAGCATGCTTCGGAGAGATCTGGTGATGGAGGTAGTGGACTcaaggaagaaaagagaagtgaGTATAGtgttggtgatgatgatggtcGTCATAAACAAGAGATTATTGTCGAGGAACCGCCCGTGGCTAATACCAAAAGATCCACACCGGAGGCTGGACGTAGCGCATCcccaaagaaaaaggaagagGTTGATGATCAACTTGAGACTACTAAAGCTGAGATGGGTGTGGTGAAAGAAGAAAATCAACGGTTAAAGATGTGTTTGAACAAAATGATGAATGAATATCAGACACTAGAAATGCAATATCAAGATATACTTAAGCAAGGGACGAAAAAGAACGCTGATAAAGGAAATGATAACCATCAAGAAATATTAGAGGAATCGGATCTTGTTTCCCTCAGCCTTGGAAGATTTCCGAGCAATCCAAGAAATGATGAGAAAATCAAAGTTTCTAAGCCACTGAAGGATGCTGAAGGGTTTAACCAAGACTTGACTCTTGGACTAGACTGCAAATTTGAAACATCAAAGTCAGGATGCACAACTGAAGCTTTGCCTAATCCAAGCCCAGAAAATAGTTCTGAAGTACCAAAGGAAGAGGCTGGGGAGACTTGGCCACCCAGTAAGGCACTCAAGACAACGAGAGACACAGAGGATGAAGTTGCTCAGCAAAATCCTACAAAGAAACCTCGAGTTTGCGTTAGAGCAAGATGTGACACTCCGACAATGAATGATGGATGTCAATGGAGGAAATATGGACAAAAGATTGCAAAGGGAAATCCTTGCCCTCGAGCTTACTATCGTTGCACAATTGCACCATCATGCCCAGTAAGAAAACAGGTGCAAAGATATGCTGATGACATGTCCATTTTAATCACCACGTATGAAGGGACCCACAACCACACTCTTCCACCTTCAGCTACTGCCATGGCATCCACAACTTCCGCAGCTGCTTCCATGCTGTTGTCTGGTTCATCAACGTCTCACTCGGGCCCAATACCTTCAACAAGCACCACTGCTGCTAACAATCTCCACGGCCTGAACTTCTATTTATCAGATGGTTCCAAACCAAGGCAATTATACCTATCCAACCCTGCACTATCATCTTCAGCTTCACATCCAACCATCACTATTGACCTCACTTCACACCCACCCTCTTCCTCCTCATCTCCCTTTGTTAGATTCACTTCAAGCTACAGCCAACCCAGATACCCCTCTTCCTCAAGCCTCAACTTCAGTAGTTCCTCCGAAACCAATGCATTATCTTGGAGCAACGGGTTCCTCAACAGTAATAATACTCAACCATACAATAACAACAGGAACATCCTTAGCAGTGTGAACTTTGGGAGACAACAAATGGAAAACATCTACCAATCCTACATgcaaaagaacaacaacaactcaaaccTTCCTCAAGGTGCTGATACTATAACTGCAGCGACGAAAGTGATCACAGCAGACCCGACTTTTCAATCAGCTTTGGCTGCGGCGCTTACTTCGTTTATTGGGGCAGGTGGTGGTGTTGGAAGCACGCGAGGAAATCAAGGTGTTGGAGAAAGTCTGGGTCAGAAAATGAAATGGGCTGAGGTGTTTCCGGCGTCTAATTCTTCTACCTTGTCTTGTTCAACTTCGAAAGTCAATGCTTGTGCGTCAAGCTTCTTGAGCAAAACGCCCACGCCCGCGAATACACAGACGAAAAGTTTGATGTTTCTACCGCCGTCTTTGCCTCTTTCTGCCCCCAAAAGTGCATCTGCATCTCCTGCAGATAATAGCGACAAcaccaattaa	1791	0.4255	MEHASERSGDGGSGLKEEKRSEYSVGDDDGRHKQEIIVEEPPVANTKRSTPEAGRSASPKKKEEVDDQLETTKAEMGVVKEENQRLKMCLNKMMNEYQTLEMQYQDILKQGTKKNADKGNDNHQEILEESDLVSLSLGRFPSNPRNDEKIKVSKPLKDAEGFNQDLTLGLDCKFETSKSGCTTEALPNPSPENSSEVPKEEAGETWPPSKALKTTRDTEDEVAQQNPTKKPRVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTIAPSCPVRKQVQRYADDMSILITTYEGTHNHTLPPSATAMASTTSAAASMLLSGSSTSHSGPIPSTSTTAANNLHGLNFYLSDGSKPRQLYLSNPALSSSASHPTITIDLTSHPPSSSSSPFVRFTSSYSQPRYPSSSSLNFSSSSETNALSWSNGFLNSNNTQPYNNNRNILSSVNFGRQQMENIYQSYMQKNNNNSNLPQGADTITAATKVITADPTFQSALAAALTSFIGAGGGVGSTRGNQGVGESLGQKMKWAEVFPASNSSTLSCSTSKVNACASSFLSKTPTPANTQTKSLMFLPPSLPLSAPKSASASPADNSDNTN	596

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu6g1285	596	MobiDBLite	consensus disorder prediction	557	572	-	-
	Ssu6g1285	596	SUPERFAMILY	WRKY DNA-binding domain	237	305	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Ssu6g1285	596	ProSiteProfiles	WRKY domain profile.	239	305	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ssu6g1285	596	MobiDBLite	consensus disorder prediction	181	229	-	-
	Ssu6g1285	596	Coils	Coil	62	110	-	-
	Ssu6g1285	596	Pfam	WRKY DNA -binding domain	245	302	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ssu6g1285	596	PANTHER	WRKY TRANSCRIPTION FACTOR 61-RELATED	47	592	-	-
	Ssu6g1285	596	SMART	WRKY_cls	244	304	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ssu6g1285	596	MobiDBLite	consensus disorder prediction	557	596	-	-
	Ssu6g1285	596	MobiDBLite	consensus disorder prediction	1	38	-	-
	Ssu6g1285	596	MobiDBLite	consensus disorder prediction	54	77	-	-
	Ssu6g1285	596	MobiDBLite	consensus disorder prediction	580	596	-	-
	Ssu6g1285	596	MobiDBLite	consensus disorder prediction	1	77	-	-
	Ssu6g1285	596	CDD	bZIP	60	96	-	-
	Ssu6g1285	596	Gene3D	WRKY domain	229	306	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Ssu6g1285	596	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	47	592	IPR044810	GO:0003700
	Ssu6g1285	596	MobiDBLite	consensus disorder prediction	181	195	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu6g1285	Ssu-Chr6	20863593	20868078	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu6g1285	65	505	WRKY Transcription Factor Family	AT1G18860	41.270	5.65e-80	259

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Ssu6g1285		WRKY	1.7e-23	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu6g1285	-		-	pvu:PHAVU_003G192000g	816.609

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu1g2144	1	61101181	61106086	Ssu6g1285	6	20863593	20868078	ECH
	Ssu3g0486	3	11597723	11600363	Ssu6g1285	6	20863593	20868078	ECH
	Ssu8g2330	8	60732831	60733673	Ssu6g1285	6	20863593	20868078	ECH
	Ssu2g1633	2	64931430	64933682	Ssu6g1285	6	20863593	20868078	ECH
	Ssu6g1285	6	20863593	20868078	Ssu6g1285	6	20863593	20868078	ECH
	Ssu2g1633	2	64931430	64933682	Ssu6g1285	6	20863593	20868078	PCT