Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1283 ATGGGATCAATTGTGAGATTAGTTTTGCCTTCTGTTACAGGTCCCAGTCTCACAATGGGGAAGTCACCAGGAAAATGGATCAAAACTGTACTGTTTGGGAAAAAGCCATCcaaatcaaatatttcaaaaggAAGAGAGAAGCTTGTTaatcaaaaagaagaagtagtAGTTACCTCCAAGGTGCCAGAAACTGGTTTGGCTTTAGAATCAACCTCCAATACTATTGCCAGACCTGAGGAAGGCCTAGAGCTGGAAAATAGAGAAGCAGAAAATGTTTTACTTGGCAATCAAGAAATAGACATAGTGGGATCTATTAATCAAGATGCTGCACTAGATCCAGAGAAAATGAGGCAGGAGGTAGCAGCAACAAAAGCACAGGCTGCTTTCAGGGGTTATTTGGCTCGGAGGGCATTTAGGGCCCTAAAAGGCATAATAAGGTTGCAAGCACTCATCCGCGGGCACTTGGTTAGGAGACAAGCTGTTGCTACATTATGCTCTATGTATGGTATTGTCAAGTTTCAAGCACTTGTTTGTGGAGGAAGAGTTAGACAGTCTAATGTTAGATCTGAAATCCATGAAAAGTGCAATGTATTGAACACTCTGGATGGCAAACTTGTCAAGCCAATTGCTATATCCACGAAAATTACGAAGCTGTCAGCAAATGCTTTCATTCGTAAGCTTCTTAGTTTGTCAACTACAATAATGGCGCTGCGGTTGCAATATGTTCCTGGTGATCCAAATTCAGTTCTAAGTTGGTTGGAGCGCTGGTCAGCATCTCACTTTTGGAAACCAGTTCCCCAACCCAAGAAAATTCGGGATACTAAGTCTCAGAGAAAGCATGGTAATATTTCAATTGGAGATACTCAAGTGAGCAAGTCAAAACGTACCAACAGGAAGCTTCCTGCTGCAAGTTTTGACTCAGCCCCGGTACAAGCAAATCCTGAATTTGAAAAACCAAAACGAAACATAAGGAAAATTCCAAGCCAGCCATCAGATCCTGTGCAGGAAAATCCACAAAGTGAGCTTGAAAAGGTTAAACGTAACTTGAGAAAGGTTCATAACCCAGCTGTTGAGAATGCTGTTCTGTCAGGAGTTGAACCTGAGATGCCAAAGGAACAATTGGAAAAGGAAACAGTTACCTCATGCCTTACTGTTTCAGAACAAGAGGTCATTAGTTCTAATGAGAAGATCAAGAAGGAAGCAACATTAAAAGTTTCCAGTGTGCCTGATATAGAAACTACTCCTAGACTTTCAGTTAGTAAGGAGGTGTCTGACACACCAAGCAGTTATCAAGTAACTGTGGAATCAAAGCCCTTGACTGAGATTAcaagtaaagataaaaacatttcTGATGAAGTGAAAAATGAGGCCATAGATTTATCAGAGCCTATTTATAAGGATGAAAATTCTCACTTAACAAATGGAGATTTGAGTCACAACGAAGATCCAATAGGCACTGAAAACCAGAAACCAAACCGAAAAACCTCAATTGTAGCAAAGCAGGAACGTGCAGAGAATGGTATACAGAATAGTCCAACATTACCGAGTTACATGGCAGCAACTGAATCTGCAAAGGCAAAGTTGAGGGCTCAAGGATCCCCACGATTTGGACAAGATGGAAGTGAAAGAAACAACCATACCCGGCGACATTCTCTGCCATCTTTGACTAACAGCAAAATTAGTTCGCATTCACCTAGGACACAGAGACCAGTTCAAGCAGGTGGCAAAGGGGGCCACAGAAGTGACAGAACTGTATCATCTTCTAGAGATGGGAATGGAAAGGTAATTCAAGCAGAGTGGAGGAGGTAA 1809 0.4074 MGSIVRLVLPSVTGPSLTMGKSPGKWIKTVLFGKKPSKSNISKGREKLVNQKEEVVVTSKVPETGLALESTSNTIARPEEGLELENREAENVLLGNQEIDIVGSINQDAALDPEKMRQEVAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLCSMYGIVKFQALVCGGRVRQSNVRSEIHEKCNVLNTLDGKLVKPIAISTKITKLSANAFIRKLLSLSTTIMALRLQYVPGDPNSVLSWLERWSASHFWKPVPQPKKIRDTKSQRKHGNISIGDTQVSKSKRTNRKLPAASFDSAPVQANPEFEKPKRNIRKIPSQPSDPVQENPQSELEKVKRNLRKVHNPAVENAVLSGVEPEMPKEQLEKETVTSCLTVSEQEVISSNEKIKKEATLKVSSVPDIETTPRLSVSKEVSDTPSSYQVTVESKPLTEITSKDKNISDEVKNEAIDLSEPIYKDENSHLTNGDLSHNEDPIGTENQKPNRKTSIVAKQERAENGIQNSPTLPSYMAATESAKAKLRAQGSPRFGQDGSERNNHTRRHSLPSLTNSKISSHSPRTQRPVQAGGKGGHRSDRTVSSSRDGNGKVIQAEWRR 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1283 602 ProSiteProfiles IQ motif profile. 118 146 IPR000048 GO:0005515
Ssu6g1283 602 PANTHER IQ-DOMAIN 5-RELATED 19 590 - -
Ssu6g1283 602 MobiDBLite consensus disorder prediction 522 602 - -
Ssu6g1283 602 MobiDBLite consensus disorder prediction 266 280 - -
Ssu6g1283 602 MobiDBLite consensus disorder prediction 476 494 - -
Ssu6g1283 602 Pfam IQ calmodulin-binding motif 121 139 IPR000048 GO:0005515
Ssu6g1283 602 Pfam IQ calmodulin-binding motif 142 159 IPR000048 GO:0005515
Ssu6g1283 602 ProSiteProfiles IQ motif profile. 142 169 IPR000048 GO:0005515
Ssu6g1283 602 PANTHER PROTEIN IQ-DOMAIN 31 19 590 - -
Ssu6g1283 602 MobiDBLite consensus disorder prediction 265 341 - -
Ssu6g1283 602 MobiDBLite consensus disorder prediction 550 569 - -
Ssu6g1283 602 Gene3D - 115 166 - -
Ssu6g1283 602 SMART iq_5 140 161 IPR000048 GO:0005515
Ssu6g1283 602 SMART iq_5 117 139 IPR000048 GO:0005515
Ssu6g1283 602 MobiDBLite consensus disorder prediction 281 300 - -
Ssu6g1283 602 Pfam Protein of unknown function (DUF4005) 501 581 IPR025064 -
Ssu6g1283 602 MobiDBLite consensus disorder prediction 460 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1283 Ssu-Chr6 20826792 20831879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1283 19 602 IQD Protein Family AT1G74690 43.719 5.17e-124 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1283 - - gmx:100794636 994.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2141 1 60994254 60999492 Ssu6g1283 6 20826792 20831879 ECH
Ssu2g1629 2 64875033 64877534 Ssu6g1283 6 20826792 20831879 ECH
Ssu6g1283 6 20826792 20831879 Ssu6g1283 6 20826792 20831879 ECH
Ssu2g1629 2 64875033 64877534 Ssu6g1283 6 20826792 20831879 PCT