Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1282 ATGCAACGGGAAGGTTGGAATTTGCCTCAAAGAgacactaccaccaccaccaccaaggTTGCATTGCAGCATTTCACCCACACATATGAAATGGCAAATACCGCTCCTTCCGGCTTCTGGACTCAAGCAAACGCGCTTTTCCGGAAGAATCTAACCTTCCAGAAACGGCACGTGAAAACCAACGTTCGGCTGATTCTGTTCCCGGCGATCCTGTGCGTGCTGCTGTACGTGGTCCAACTCATAATCGACATGCAATTCGACAAAACCGGGCTCAAATGCGGCTGCGTCTGTGCCAAAAACAGAACCAAAGAATCTCAGTGCCCCGACTCCGAGAAGGTGTGTGGGGTCCAGTATTCGGATCCCGCTCAAGCCGCCGCGTGTGCCATTCCCAACCCCTCCGAATGGCCACCGCTCTTGCAACTTCCGGGTCCTCCGAACCGGGCCGTGCGAAGCGTTTCTCTTCCCTATCCGGATTTGCCCGATGCCTCGTGCAGGAGAACCGACTCGTGTCCTTTCACTCTGCTCGTCACCGCAGAGAATCGCTTCTTTGCGGAAAaCGTGTCTGCAAATATGTTTGGGGGTGCCTTCAGTATAAGTGACTCTGATAGTGATTTCTTGGCTAGTTTGCCCATGAATGTGCTGGGATCTGAATCAACGCCCGGggaaaacaattttgttgaATCTGCTTTCTCTTCTGGTCTTCCCATTTATTATCTACAAACAAAGTGCAAGGACACAGAGAACCCTGGACTCTCCTTTCCCTCGTTACCGATAGCAGACAATGAGGTCAAATGTGCTCAGGCTCTACATTTATGGCGTAATAGTTCTTCTGAGATCAACAATGAGCTATATAAAGGTTATCAAAGTGGTAACACAGAAGGACAAGTCAATGAGATAGTTTCAGTAACTTCATACATAGGTGTCTTCGGAACCGGGTTATTAGGTGGCTATCTTTTCCAAAACTTTGTTCAAAATACATCATTTCCGAGGGGGTGGATCATTGTTATGGAGTTGTATCCTGGGTTTGCTTTATATCGTGGGTTATATGAGTTAGCTCAATTTTCCTTTGAGGGGAATTCTTCGGGGACTGGTGGTATGCAGTGGCAGGATCTGAGTGAAAGCACCAATGGCATGAAAGAGGTCttaattatcatgttttttgaGTGGATAGTGATTCTTTTTGCTGCCTTCTACATTGATCAAGTATTGTCATCAGGAAGTAGAAAAAGTCCTCTTTTCTTCTTGAAAGGATTTCAGAAAAAGCCTCCTTTCCAGAAGCTTGATACCCAAATGCAGATGTCTAAAGTATTCTCTCCGATGGAGAAACCTGATCTCATCCAAGAGaAGGAGAAGGTGGAGAAACTGCTACTTGAACCAACTATTAATCATGCAATTGTATGTGACGACCTAAAAAAAGTCTATCCAGGGAGGGATGGAAATCCAGATAAATTTGCAGTGAGAGGGTTGTTCCTTTCTGTGCCTCAAGGGCAATGCTTTGGTATGCTTGGTCCCAATGGAGCTGGGAAGACCTCTTTTATCAGTATGATGATTGGTCTCACAAAGCCAAGCTCTGGTACGGCATTTGTTCAAGGCTTGGACATAAGATCTCATATGGATGGAATATATACTACCATGGGTGTATGCCCACAACATGACTTGCTGTGGGAAAGCTTGACAGGGAGAGAGCACCTACTTTTTTATGGCAGACTTAAAAATCTTAAAGGTTCCGTCTTGACACAAGCAGTAGAAGAATCTTTGAAGAGTTTAAACCTTTTTCATGGAGGAGTTGCCGATAAACAAGTTGGCAAATATAGTGGAGGGATGAAGAGGAGGCTTAGTGTTGCAATTTCATTGATTGGGGATCCGAGCGTTGTTTACATGGATGAACCAAGTACCGGGTTAGACCCTGCCTCAAGAAAAAGCTTATGGAATGTTGTCAAGCATGCAAAACAGAACCGTGCAATCATTCTCACCACACATTCCATGGAAGAGGCAGAGGCCTTATGTGATCGATTAGGAATATTTGTAAATGGTAGCTTGCAGTGCGTAGGAAATCCAAAGGAGCTGAAAGCAAGATATGGAGGAACTTACGTGTTCACAATGACAACATCTTGCGATCATGAAAAAGATGTTGAGAACATGGTGCTGAAACTCACCCCAAATGCCAGCAAGATATACCATCTCTCTGGTACACAGAAGTTTGAGCTGCCGAAAGAGGATGTTAGAATAGCGGATGTGTTCCAAGCTGTTGACACTGCAAAGAGAAAGTTCACTGTTACTGCATGGGGTTTAGCTGACACCACATTGGAAGATGTGTTCATTAAGGTTGCACGTGAGGCTCAGGCATTTGACACCTTGTCATAA 2364 0.442 MQREGWNLPQRDTTTTTTKVALQHFTHTYEMANTAPSGFWTQANALFRKNLTFQKRHVKTNVRLILFPAILCVLLYVVQLIIDMQFDKTGLKCGCVCAKNRTKESQCPDSEKVCGVQYSDPAQAAACAIPNPSEWPPLLQLPGPPNRAVRSVSLPYPDLPDASCRRTDSCPFTLLVTAENRFFAENVSANMFGGAFSISDSDSDFLASLPMNVLGSESTPGENNFVESAFSSGLPIYYLQTKCKDTENPGLSFPSLPIADNEVKCAQALHLWRNSSSEINNELYKGYQSGNTEGQVNEIVSVTSYIGVFGTGLLGGYLFQNFVQNTSFPRGWIIVMELYPGFALYRGLYELAQFSFEGNSSGTGGMQWQDLSESTNGMKEVLIIMFFEWIVILFAAFYIDQVLSSGSRKSPLFFLKGFQKKPPFQKLDTQMQMSKVFSPMEKPDLIQEKEKVEKLLLEPTINHAIVCDDLKKVYPGRDGNPDKFAVRGLFLSVPQGQCFGMLGPNGAGKTSFISMMIGLTKPSSGTAFVQGLDIRSHMDGIYTTMGVCPQHDLLWESLTGREHLLFYGRLKNLKGSVLTQAVEESLKSLNLFHGGVADKQVGKYSGGMKRRLSVAISLIGDPSVVYMDEPSTGLDPASRKSLWNVVKHAKQNRAIILTTHSMEEAEALCDRLGIFVNGSLQCVGNPKELKARYGGTYVFTMTTSCDHEKDVENMVLKLTPNASKIYHLSGTQKFELPKEDVRIADVFQAVDTAKRKFTVTAWGLADTTLEDVFIKVAREAQAFDTLS 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1282 787 ProSitePatterns ABC transporters family signature. 604 618 IPR017871 GO:0005524
Ssu6g1282 787 Pfam ABC transporter 490 631 IPR003439 GO:0005524
Ssu6g1282 787 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 465 702 IPR003439 GO:0005524
Ssu6g1282 787 Gene3D - 457 725 IPR027417 -
Ssu6g1282 787 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 35 300 IPR026082 GO:0016021|GO:0055085|GO:0140359
Ssu6g1282 787 PANTHER ABC TRANSPORTER A FAMILY PROTEIN 35 300 - -
Ssu6g1282 787 SMART AAA_5 495 679 IPR003593 -
Ssu6g1282 787 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 302 787 IPR026082 GO:0016021|GO:0055085|GO:0140359
Ssu6g1282 787 PANTHER ABC TRANSPORTER A FAMILY PROTEIN 302 787 - -
Ssu6g1282 787 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 465 698 IPR027417 -
Ssu6g1282 787 CDD ABC_subfamily_A 469 690 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1282 Ssu-Chr6 20794265 20816404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1282 469 689 Calmodulin-binding Proteins AT2G36910 24.891 8.70e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1282 - - gmx:100792897 889.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1282 6 20794265 20816404 Ssu6g1282 6 20794265 20816404 ECH