Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1280 ATGGGAAATTGCTTTGGAACTCGTTGCAAGGTTGATGACACTTTGAACTCCCAACCCTGTTCTGatGTTACCAAAGTTCACCATAGAAGCACCCACTTGTTAGTTCATTCAAGTCCAACAGTGTACGGATACAGTGATGAGGGTAAACCTGAGATTCTCCCCACTCCAAGATCTGAAGGGGACATACTTTCATCCCCACATTTAAAGGCCTTCACATTATATGATCTTAAGAAGGCCACCAGAAATTTCCGTCCTGATAGTCTAATTGGAGAAGGGGGTTTTGGTTATGTCTATAAGGGGTGGATTGGTGAGGGTAAATCCTTTGGGGCTACAATGCCTGGATCTGGAATGGTTGTAGCTGTGAAGAAGCTTAAGCCTGAAGGTTTTCAAGGACATAAAGAGTGGCTGTCTGAACTCAATTATCTTGGACAACTTCGCCATCCAAATCTTGTCAAACTTATTGGATACTGCCTAGAAGGAGATAACCGGCTTCTTGTGTACGAGTACATGCCCAACCGAAGCTTGGAAGATCATCTATTCCGCAAGGGCAGACAACCACTTCCTTGGGCAACAAGAATCAAGGTTGCTATTGGTGCTGCTCGAGGCCTCTCCTTCCTACATGACTCTAAGCAACAAATTATCTACCGTGATTTCAAGgcttctaatattttattagattcgGAATTTAATGCAAAACTCTCAGACTTTGGATTGGCCAAAGCAGGGCCCACCGGTGATCATTCTCATGTTTCCACGCAAGTCCTGGGCACTCACGGCTATGCTGCTCCTGAATATATTGCTacagGTCGGCTGACTTCAAGGTGTGATGTCTATAGCTTTGGGGTTGTGCTATTGGAACTACTATCAGGGCGCCATGCTGTTGACAATACAAAATCTGGAGTGGAACATAATCTGGTAGATTGGGCAAGACCCTATTTGGGTGATAGGAGGAAGTTGTTCCGGATTATGGACACCAAGTTAGAAGGGCAATACCCACAAAGAGCAGCTTATACAGTTGCAATTATTGCTTTACAATGTATTAGTGAGGCCAAGACTAGACCACATATGTCTGAGGTTTTGGCCGCCTTGGAACACCTGCCAGTCATTAGACATTCAGCTAGCCCATCTAGAGAAGAGAAATCCATACCAAGTCCCATGAGAGAGGGTGGGAAGTCCTACGGTAAAAATCCCTTTGAGACATAA 1203 0.4397 MGNCFGTRCKVDDTLNSQPCSDVTKVHHRSTHLLVHSSPTVYGYSDEGKPEILPTPRSEGDILSSPHLKAFTLYDLKKATRNFRPDSLIGEGGFGYVYKGWIGEGKSFGATMPGSGMVVAVKKLKPEGFQGHKEWLSELNYLGQLRHPNLVKLIGYCLEGDNRLLVYEYMPNRSLEDHLFRKGRQPLPWATRIKVAIGAARGLSFLHDSKQQIIYRDFKASNILLDSEFNAKLSDFGLAKAGPTGDHSHVSTQVLGTHGYAAPEYIATGRLTSRCDVYSFGVVLLELLSGRHAVDNTKSGVEHNLVDWARPYLGDRRKLFRIMDTKLEGQYPQRAAYTVAIIALQCISEAKTRPHMSEVLAALEHLPVIRHSASPSREEKSIPSPMREGGKSYGKNPFET 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1280 400 Gene3D Transferase(Phosphotransferase) domain 1 170 381 - -
Ssu6g1280 400 ProSiteProfiles Protein kinase domain profile. 83 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1280 400 Gene3D Phosphorylase Kinase; domain 1 55 169 - -
Ssu6g1280 400 PANTHER OS01G0588500 PROTEIN-RELATED 24 383 - -
Ssu6g1280 400 Pfam Protein tyrosine and serine/threonine kinase 87 361 IPR001245 GO:0004672|GO:0006468
Ssu6g1280 400 CDD STKc_IRAK 89 366 - -
Ssu6g1280 400 ProSitePatterns Protein kinases ATP-binding region signature. 89 122 IPR017441 GO:0005524
Ssu6g1280 400 PANTHER BNAC02G17010D PROTEIN 24 383 - -
Ssu6g1280 400 SUPERFAMILY Protein kinase-like (PK-like) 61 364 IPR011009 -
Ssu6g1280 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Ssu6g1280 400 MobiDBLite consensus disorder prediction 372 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1280 Ssu-Chr6 20780022 20785128 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1280 69 366 Glycoside Hydrolase AT3G07070 52.318 8.48e-103 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Ssu6g1280 PK_Tyr_Ser-Thr 5.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1280 - - gmx:100791844 699.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2324 8 60671767 60676853 Ssu6g1280 6 20780022 20785128 ECH
Ssu6g1280 6 20780022 20785128 Ssu6g1280 6 20780022 20785128 ECH
Ssu2g1627 2 64799516 64802913 Ssu6g1280 6 20780022 20785128 PCT