Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1277 ATGGTGCACGTTTCCTTCTACCGAAACTaTGGGAAAACGTTCAAGAAGCCTCGTCGTCCGTACGAGAAGGAGCGTTTGGACGCGGAGTTGAAGCTGGTCGGGGAGTACGGGCTTCGCTGCAAGAGGGAGCTCTGGAGGGTTCAGTACGCCCTCAGCCGCATCCGTAACAATGCGAGGAATCTGTTGACCCTCGACGAGAAGAATCCCCGTCGAATCTTCGAGGGCGAGGCCCTTCTCCGAAGAATGTTCCGCTACGGGCTTCTCGACGAGACGCAGAACAAGCTCGATTACGTCTTGGCCCTCACCGTCGAGAACTTTCTCGAACGCCGCCTCCAAACCCTCGTCTTCAAATCCGGCATGGCCAAGTCCATTCACCACGCCAGGGTCCTCATCAGGCAGAGGCACATCAGGGTTGGGAGGCAGGTGGTGAACATTCCATCATTCATGGTCAGGGTTGATTCGCAGAAGCACATTGACTTCTCACTCACAAGTCCTCTTGGTGGTGGTCGTCCAGGACGTGTGAAGAGAAAGAACCAAAGGGCTGCTGCTAAGAAGGCTGCTGGTGGAGATGGAGATGAGGAGGatgaagattaa 594 0.5471 MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARNLLTLDEKNPRRIFEGEALLRRMFRYGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRKNQRAAAKKAAGGDGDEEDED 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1277 197 MobiDBLite consensus disorder prediction 161 197 - -
Ssu6g1277 197 Pfam Ribosomal protein S4/S9 N-terminal domain 8 108 IPR001912 GO:0019843
Ssu6g1277 197 PANTHER 30S 40S RIBOSOMAL PROTEIN 5 197 IPR022801 -
Ssu6g1277 197 Gene3D - 108 165 IPR036986 GO:0003723
Ssu6g1277 197 ProSitePatterns Ribosomal protein S4 signature. 107 131 IPR018079 GO:0019843
Ssu6g1277 197 CDD S4 109 153 - -
Ssu6g1277 197 SUPERFAMILY Alpha-L RNA-binding motif 12 159 - -
Ssu6g1277 197 SMART Ribosomal_S4_2 8 108 IPR001912 GO:0019843
Ssu6g1277 197 TIGRFAM uS4_arch: ribosomal protein uS4 11 166 IPR005710 GO:0003735|GO:0006412|GO:0015935
Ssu6g1277 197 ProSiteProfiles S4 RNA-binding domain profile. 109 183 - -
Ssu6g1277 197 PANTHER 40S RIBOSOMAL PROTEIN S9-2-LIKE 5 197 - -
Ssu6g1277 197 SMART s4_6 109 180 IPR002942 GO:0003723
Ssu6g1277 197 Pfam S4 domain 109 152 IPR002942 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1277 Ssu-Chr6 20725483 20726567 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1277 1 187 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 91.979 4.64e-127 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1277 K02997 - gmx:100807649 361.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2126 1 60583624 60585254 Ssu6g1277 6 20725483 20726567 ECH
Ssu6g1277 6 20725483 20726567 Ssu6g1277 6 20725483 20726567 ECH