Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1274 ATGTCAATAAAAtgggaaataaataaaaagagcaaaaagaaaaagatcacGTGGGGAACTCATTGGTGGTTGTTCATTGCAGCTAAAGAGCATGACCTCGCCACGCGCCTTCGTGTGACAGGTGCCCTCCCGGCACACTCCATTGCCACAAACcaatcttttttctctctcttctgcCCTAATTTCTATTTTCCTCCCACGAATTCAACTCTTTCATTTCTACTTCCAATTCTCCATAACGAATTCCATCCTTCTACCTTCAATATTCCAATTCTATTCCTTCCGAATCCTCTTCCGCGAGTTAGGAAATTTTGTTGCTCGAGGAATTGCTTAGGGCATAGCTGGCTTTGTGCTTTTGTTCATATGGGATCAGAGAGTGTGGCTCCAGTGGTTGAGACATCAAAAAGCAGGTCTTCTCCTGGTAAAATGAACCAAGGGAAAGTCCCCAGGAAAATTCACAAGGctgaaagggagaaaatgaagCGTGAACATTTGAATGAACTCTTTCTTGATCTTGCCAATGCACTTGATCTAAATGAGAACAATGGAAAGGCTTCTATATTGTGTGAAGCTTCTAGGTTGCTAAAAGATTTACTCTGTCAGATCGAGTCCCTCAAGAAAGAGAACGTCACTCTGTTGTCTGAATCTCATTATGTGACCATGGAGAAAAATGAGCTGAAGGAGGAGAATTGTAGCCTAgaaactcaaattgaaaaacttcAAGGTGAGATACAGGCAAGAGTGGCTCAATCTAAACCTGACCTGAATGTACCTCCTCATTTGGAACCACTGGAGCAGACAAATATTCCAGGACAGAGTCTCCAATTGCATACCATAGAACCTAACTTGCAGCAAGGATCTGCAGTTTTGGTTGTCCCCTTTCGTCCTGATCTTCAAGCTTCTTTTCCAGCTCCTAATGTTACTGAGGTCACGCCAAAATCTACATCCGTTGTCAGTAAACCACATGCCAGGTATCCCACACCAGCAGATTCATGGCCATCACAGCTGCTCGAAAAACAACCAACTTCAAGTTAA 1035 0.3952 MSIKWEINKKSKKKKITWGTHWWLFIAAKEHDLATRLRVTGALPAHSIATNQSFFSLFCPNFYFPPTNSTLSFLLPILHNEFHPSTFNIPILFLPNPLPRVRKFCCSRNCLGHSWLCAFVHMGSESVAPVVETSKSRSSPGKMNQGKVPRKIHKAEREKMKREHLNELFLDLANALDLNENNGKASILCEASRLLKDLLCQIESLKKENVTLLSESHYVTMEKNELKEENCSLETQIEKLQGEIQARVAQSKPDLNVPPHLEPLEQTNIPGQSLQLHTIEPNLQQGSAVLVVPFRPDLQASFPAPNVTEVTPKSTSVVSKPHARYPTPADSWPSQLLEKQPTSS 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1274 344 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 198 IPR011598 GO:0046983
Ssu6g1274 344 MobiDBLite consensus disorder prediction 305 321 - -
Ssu6g1274 344 PANTHER TRANSCRIPTION FACTOR BHLH47 125 343 - -
Ssu6g1274 344 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 150 225 IPR036638 GO:0046983
Ssu6g1274 344 Coils Coil 195 215 - -
Ssu6g1274 344 PANTHER TRANSCRIPTION FACTOR BHLH47 125 343 - -
Ssu6g1274 344 Coils Coil 223 243 - -
Ssu6g1274 344 MobiDBLite consensus disorder prediction 305 344 - -
Ssu6g1274 344 CDD bHLH_AtILR3_like 154 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1274 Ssu-Chr6 20695477 20697713 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1274 142 337 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47640 49.770 4.53e-56 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1274 - - gmx:100782436 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2123 1 60523589 60525550 Ssu6g1274 6 20695477 20697713 ECH
Ssu6g1274 6 20695477 20697713 Ssu6g1274 6 20695477 20697713 ECH