Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1271 ATGGAGGGAGGCGACGatctccaccaccaccatcaccaccaccaccaccgccagaACTTCCCATTCCAGCTCCTGGAGAAGAAAGAGGACCAAGAAGCGGCTTCATGCTCCACCTCCTCCCCCTACCCGTCCCTAGCAATCTCCGCGGAACCCAGCACATCCAATTCCACCCGATCCAACCAGCTCGCGGCGGCGACGGAACCGCCGAACAGCAAGAAGCCGCCCCCGAAACGCACCTCCACGAAGGACCGCCACACGAAAGTCGACGGGCGCGGGCGCCGCATCCGAATGCCCGCCCTCTGCGCCGCCCGCGTCTTCCAACTCACCCGCGAGCTCGGCCACAAGTCCGACGGCGAGACGATCGAGTGGCTCCTCCAGCAGGCCGAGCCCGCCGTCATCGCCGCCACCGGCACCGGCACCATCCCCGCCAACTTCACCTCCCTCAACATCTCGCTCCGCAGCTCCGGGTCCTCCATGTCCGTCCCCTCCCAGCTCCGATCCTCCTACTTCAACCCCAACTTCTCCCTCCAGCAACGTAGGGCCTTGTTCCCCGGCATCGGTCTATCCTCCGaacacaacaacagcagcaGCAACACCTCCACGCTCCTCAACTTCCAATCCAACAACCTCAACGCCGCCATGCTCCAGGCCAAGCCGGAGGCGCCCTCCTCGTCCACGATGGATTTGTCGGAGACCGGTGCCGAGGAATCGAATCTGGGGAGAAAACGAAGACCCGCGGAACAAGACCTGTCCTCCCCGCAGCACCAAATGGGGAGCTATCTCCTGCAGTCGAGTGCAGGCGCGATTCCAGCCAACCACGCCGCCAATATATGGATGCTCGCCAACTCGAACAATAGCCAAGTCATGAGTGGCGATCCCATATGGACCTTCCCACCGGTTAATAACAGTGCCCTTTATAGAGGCACCGTGTCTAGCGGGTTGCATTTCATGAATTTTCCCACGCCCATGGCGTTGTTGCCGAGTCAGCAACTAGGGTCTTCTGGGATTGGTGCCGTTGGAGGAAGCACTGGAGGGGGGAATAATATGAATGAAGGGCATTTGAGTATGCTTGCGGGGCTTACCCCTTATCGCCCCGTAATTGGTGTTTCCGAGTCTCAGGCCAGTGGGTCGCAGTCGCATCGCGGGGGCGGCGCCGATGATCGCCATGATAATAGCACGAGTCACCACTCCTAG 1194 0.5821 MEGGDDLHHHHHHHHHRQNFPFQLLEKKEDQEAASCSTSSPYPSLAISAEPSTSNSTRSNQLAAATEPPNSKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSYFNPNFSLQQRRALFPGIGLSSEHNNSSSNTSTLLNFQSNNLNAAMLQAKPEAPSSSTMDLSETGAEESNLGRKRRPAEQDLSSPQHQMGSYLLQSSAGAIPANHAANIWMLANSNNSQVMSGDPIWTFPPVNNSALYRGTVSSGLHFMNFPTPMALLPSQQLGSSGIGAVGGSTGGGNNMNEGHLSMLAGLTPYRPVIGVSESQASGSQSHRGGGADDRHDNSTSHHS 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1271 397 MobiDBLite consensus disorder prediction 382 397 - -
Ssu6g1271 397 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 12 396 IPR005333 GO:0003700
Ssu6g1271 397 PANTHER TRANSCRIPTION FACTOR TCP14-LIKE 12 396 - -
Ssu6g1271 397 MobiDBLite consensus disorder prediction 1 94 - -
Ssu6g1271 397 MobiDBLite consensus disorder prediction 217 233 - -
Ssu6g1271 397 MobiDBLite consensus disorder prediction 217 255 - -
Ssu6g1271 397 MobiDBLite consensus disorder prediction 19 33 - -
Ssu6g1271 397 ProSiteProfiles TCP domain profile. 81 135 IPR017887 -
Ssu6g1271 397 MobiDBLite consensus disorder prediction 34 67 - -
Ssu6g1271 397 MobiDBLite consensus disorder prediction 372 397 - -
Ssu6g1271 397 MobiDBLite consensus disorder prediction 235 249 - -
Ssu6g1271 397 Pfam TCP family transcription factor 79 247 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1271 Ssu-Chr6 20672766 20673959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1271 71 390 TCP Transcription Factor Family AT3G47620 44.337 1.05e-61 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Ssu6g1271 TCP 4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1271 - - pvu:PHAVU_003G190900g 627.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1613 2 64416622 64417797 Ssu6g1271 6 20672766 20673959 PCT