Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1264 aTGTATGACATGGGGAGGCCACCTTGCTGTGACAAAATTGGGATTAAGAAAGGACCCTGGACTCCAGAAGAGGACATCATCTTGGTGTCTTACATTCAAGAACACGGACCAGGAAATTGGAGATCAGTTCCCACAAACACAGgtttgATGAGATGCAGCAAGAGCTGCAGGCTTAGATGGACTAATTATCTTCGACCGGGTATCAAACGAGGTAATTTCACGGAACATGAGGAGAAGATGATAATCCACCTCCAAGCCCTTTTGGGCAACAGATGGGCTGCTATAGCTTCCTATCTTCCACAGAGGACAGACAAcgacataaaaaattattggaacacccatttgaaaaagaagctgaaacaaaatgaccaaaatgggACTACTGATGAGGGTGTTGACCAATGGGGGCATTCTTCTTCATCACCCGCGAAGGGTCAGTGGGAGAGAAGACTGCAAACAGATATCCAAATGGCAAAGCAAGCCTTGTGTGAGGCTTTGTCCCTTCACAAGCCAGCAACCCATCATGTTGTGCCCGATACCAAGCCTTCTTCAAGTTCTCATCATCACCCTCCCTACAACCATGCATCAACCCCATACGCATCAAGCTACGAAAACATTTCTCGGTTGATGGAAAACTGGATGAAATCCCCAAACTCAAACGAAACAAATTCACCAGGGTATTATTCCTTCAGCAACGTGGTTAATACAACAGGATCCAGTTCTAGTGAGGGAGCACACAGCGCCACTACATGCACACAAGATCATGCTTTTGACTCCTTGTTGACCCTCAACTCCTCCAAACATTATGGCTCTCCATCTGAGACGCAAGTGCCTCTTACGATTCTGGAGAAGTGGCTTTTTGATGATGGGGCAGCTCAATGTCACGAAGATCCGATGAACATGTCGCTGGAGGAAAGTACCGCATGTTTGTTTTAG 936 0.4359 MYDMGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTEHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKQNDQNGTTDEGVDQWGHSSSSPAKGQWERRLQTDIQMAKQALCEALSLHKPATHHVVPDTKPSSSSHHHPPYNHASTPYASSYENISRLMENWMKSPNSNETNSPGYYSFSNVVNTTGSSSSEGAHSATTCTQDHAFDSLLTLNSSKHYGSPSETQVPLTILEKWLFDDGAAQCHEDPMNMSLEESTACLF 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1264 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 119 IPR017930 -
Ssu6g1264 311 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 297 - -
Ssu6g1264 311 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Ssu6g1264 311 MobiDBLite consensus disorder prediction 178 198 - -
Ssu6g1264 311 MobiDBLite consensus disorder prediction 125 147 - -
Ssu6g1264 311 CDD SANT 72 115 IPR001005 -
Ssu6g1264 311 CDD SANT 19 64 IPR001005 -
Ssu6g1264 311 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Ssu6g1264 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 68 IPR017930 -
Ssu6g1264 311 Gene3D - 16 69 - -
Ssu6g1264 311 Pfam Myb-like DNA-binding domain 70 115 IPR001005 -
Ssu6g1264 311 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Ssu6g1264 311 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 4 297 - -
Ssu6g1264 311 SMART sant 69 117 IPR001005 -
Ssu6g1264 311 SMART sant 16 66 IPR001005 -
Ssu6g1264 311 MobiDBLite consensus disorder prediction 174 198 - -
Ssu6g1264 311 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Ssu6g1264 311 Gene3D - 72 135 - -
Ssu6g1264 311 MobiDBLite consensus disorder prediction 118 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1264 Ssu-Chr6 20539433 20541358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1264 4 296 MYB Transcription Factor Family AT5G62470 52.161 9.63e-105 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu6g1264 Myb_DNA-binding 9.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1264 K09422 - gmx:100812460 520.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1264 6 20539433 20541358 Ssu6g1264 6 20539433 20541358 ECH