Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1263 ATGAAAAAGAGGCAGGTGGTGGTGAAAAGAGAATATGCCACGTCATCTTCAACGGTGGGAAATATTCGATACGGGGAGTGCCAGAAGAATCATGCAGCGAACACGGGAGGTTATGCTGTGGATGGTTGCAGGGAATTCATGGCTAGCGCGGGTGAAGGAACAAGTGCGGCGCTTACGTGTGCGGCCTGCGGCTGCCACAGGAACTTCCACAAAAGGGAAGTACTGCACGGCGCAAACTGA 240 0.5333 MKKRQVVVKREYATSSSTVGNIRYGECQKNHAANTGGYAVDGCREFMASAGEGTSAALTCAACGCHRNFHKREVLHGAN 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1263 79 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 23 74 IPR006456 -
Ssu6g1263 79 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 24 73 IPR006456 -
Ssu6g1263 79 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 3 74 - -
Ssu6g1263 79 PANTHER BNAA09G44460D PROTEIN 3 74 - -
Ssu6g1263 79 Pfam ZF-HD protein dimerisation region 22 74 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1263 Ssu-Chr6 20512236 20512475 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1263 1 74 Zinc finger-homeobox gene family AT3G28917 65.476 8.21e-32 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Ssu6g1263 ZF-HD_dimer 1.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1263 - - gmx:100797273 160.614