Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1259 ATGGAGTTTCAGCCACTTATGGGTTGGAGCTCTTACTatgaaatagatgaaaaacCATTTCCGTTTTCGTGCCAATTTTCTTACAGCGAAAACGGTGAAGTGTATCCTGCACTGGATTGGCCACACGATTTTCCCATACAAGACCACTATCTTGATGCTGTTCCTCTTATGGAGTATTACCCTTCAGATCCTTTATATGAAACTCTCGCCATTGAACCAACACCAAGCGTGCGAGACtatgatttttatgatattaaaaaggGGTTTTCTGTCTGGAACGAAGTTGATGCTGTGTTTGATTcagaaaaagttttattatttcgCAACGATGGAGAAAGCGGGAGTGGGAAGGAAATGATGGAAGACGGAAAAGTCAACCGAGGGAGAGAAGAGAGCAGTACCAGAATGTTATCAAGGAAAACTATATCACAGTACTTCTACATGCCCATAACACAAGCAGCTAGGGAACTTAATGTGGGCCTAACACTTTTGAAAAAAAGGTGTAGGGAGCTGGGAATCCGAAGGTGGCCCCACAGGAAGCTCATGAGCTTGCAAACCCTGATAAATAATGTACAGGAGCTAGGGAAAGAGGAGGGGCACGAGAATGAAGAGAAGTTGAGAAATGCCATTGAGATGTTGGAGAAGGAAAAGAAGCTTTTGGAGGAAATGCCGGATATTGAACTCGAAGATAATACAAAAAGACTTAGACAAGCCTGTTTCAAGGCCAACTACAAGAAGAGGAAGCTCGTAAGGCGGAAGGAACCACAGTCTTCTTCTTTCAGTGCTAGTGCTACAGCTATTGACACGACAGGAGAATATAGTtatgaaaaggaagaagaacgACACATCAAGTTTCTGTTGTCTCAGTTAACATAA 876 0.3984 MEFQPLMGWSSYYEIDEKPFPFSCQFSYSENGEVYPALDWPHDFPIQDHYLDAVPLMEYYPSDPLYETLAIEPTPSVRDYDFYDIKKGFSVWNEVDAVFDSEKVLLFRNDGESGSGKEMMEDGKVNRGREESSTRMLSRKTISQYFYMPITQAARELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLINNVQELGKEEGHENEEKLRNAIEMLEKEKKLLEEMPDIELEDNTKRLRQACFKANYKKRKLVRRKEPQSSSFSASATAIDTTGEYSYEKEEERHIKFLLSQLT 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1259 291 Pfam RWP-RK domain 137 184 IPR003035 -
Ssu6g1259 291 PANTHER PROTEIN RKD1-RELATED 38 263 - -
Ssu6g1259 291 ProSiteProfiles RWP-RK domain profile. 120 205 IPR003035 -
Ssu6g1259 291 PANTHER PROTEIN RKD4 38 263 IPR044607 GO:0003700
Ssu6g1259 291 Coils Coil 196 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1259 Ssu-Chr6 20446453 20447701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1259 127 248 AtRKD Transcription Factor Family AT1G18790 71.654 4.85e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Ssu6g1259 RWP-RK 4.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1259 - - gmx:100788666 447.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1259 6 20446453 20447701 Ssu6g1259 6 20446453 20447701 ECH
Ssu6g1259 6 20446453 20447701 Ssu1g2104 1 59961714 59962845 PCT