Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1251 ATGTCACCACATCTTTCAACTTTTGTGAAGCAAATCAAGTCACCTGATGCTTTTGCAGAAAGAGGTCTCAGGATGGGAAGAGTTAAATTAAAGATCAAGAAATTAGAGAGCATAAGCAATCGACATGTGACTTATTCAAAGCGAAAAAGTGGAATTTTAAAGAAAGCAAAGGAATTATCAATACTATGTGACATAGATATTGTCCTTCTCATGTTTTCTCCAACAGGAAAGCCTACATTACTACAAGGAGAGCACagCAATATTGAGGAGCTCATTGCAAAATTTGCTCAACTTAGCCCACAAGAAAGGGCCAAAAGGTTTGCCAAACTTTTTGATAAAgcACTAAAGAAAACCTTCAAGAAGTTGGACCATGATGTAAAAATACAAGATTTTTTAGTTATGATCCGCATGCAGGAATTATCTCATCAAGTGAGGGTTTTACAAGCTCAACTCACAGAAGTACATCAGAGACTGAGCTATTGGAATAATTTAGAGAAGATCAATAACTTAGAACATCTTAGGCAAATGGAAGACTCATTGCAGGAATCAATCAATCGAGTATGCCTACAGAAAGAAAATTTAGGAAAGCACCAACTCATGTCACTTGAATATGCTAACCAGGTAGCAAatGAAGGGATGACATTACCCTTGATGATGGCAAGTCTGCAAGAATCCCAACCCATGTCTTGgcttttaaataatgataatcatCAATTGATGTTACCTAGTGAACcgaaatttttatcatatagTGATAATACCAATAGAGATGTTGAGTGCTCCACTGACATTTCACTCCCAAGCTATTCTGGTTATATTGGGAGTAGCAAACTTGAAGTTGCCAGCTCTCCCCAGGTCACTACTATGGGTCAAGGAGGTGATGCCATGAACGAGTTAAATGGAACTTCTTACTTAAATGTACAATGTTGTGACCAGTTTGCATACCCTCCTCCACCAGACATTGAGGAAATGAAACATTTCCCAACATtgaataataaaccaaacaccATGGATTACCAAGTTAATAATAGCTTTGATCTTCCCAGATCATTGTTTGAAAATGGACATCAGTTTTGGAATTCTGCTGCTGGGTCTTGCGGGATTGCCATGTATAATGAGAACAACTACCATAGGGTAAGTAGTCCTTTTCTATATCATTAG 1161 0.3609 MSPHLSTFVKQIKSPDAFAERGLRMGRVKLKIKKLESISNRHVTYSKRKSGILKKAKELSILCDIDIVLLMFSPTGKPTLLQGEHSNIEELIAKFAQLSPQERAKRFAKLFDKALKKTFKKLDHDVKIQDFLVMIRMQELSHQVRVLQAQLTEVHQRLSYWNNLEKINNLEHLRQMEDSLQESINRVCLQKENLGKHQLMSLEYANQVANEGMTLPLMMASLQESQPMSWLLNNDNHQLMLPSEPKFLSYSDNTNRDVECSTDISLPSYSGYIGSSKLEVASSPQVTTMGQGGDAMNELNGTSYLNVQCCDQFAYPPPPDIEEMKHFPTLNNKPNTMDYQVNNSFDLPRSLFENGHQFWNSAAGSCGIAMYNENNYHRVSSPFLYH 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1251 386 CDD MADS_SRF_like 26 106 IPR033897 GO:0000981|GO:0000987|GO:0045944
Ssu6g1251 386 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 35 79 IPR002100 GO:0003677|GO:0046983
Ssu6g1251 386 Gene3D - 38 121 IPR036879 GO:0003677|GO:0046983
Ssu6g1251 386 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 25 379 - -
Ssu6g1251 386 PANTHER SERUM RESPONSE FACTOR HOMOLOG 25 379 - -
Ssu6g1251 386 PRINTS MADS domain signature 47 62 IPR002100 GO:0003677|GO:0046983
Ssu6g1251 386 PRINTS MADS domain signature 62 83 IPR002100 GO:0003677|GO:0046983
Ssu6g1251 386 PRINTS MADS domain signature 27 47 IPR002100 GO:0003677|GO:0046983
Ssu6g1251 386 ProSiteProfiles MADS-box domain profile. 25 77 IPR002100 GO:0003677|GO:0046983
Ssu6g1251 386 SMART madsneu2 25 84 IPR002100 GO:0003677|GO:0046983
Ssu6g1251 386 Coils Coil 137 157 - -
Ssu6g1251 386 SUPERFAMILY SRF-like 25 105 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1251 Ssu-Chr6 20333094 20339755 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1251 25 300 Type I MADS-box Gene Family AT2G03060 47.735 1.71e-77 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ssu6g1251 SRF-TF 2.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1251 - - pvu:PHAVU_003G189100g 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1251 6 20333094 20339755 Ssu6g1251 6 20333094 20339755 ECH