Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1250 ATGCCTTCTGCTTTTAACTTCCTCACAACTTCTCTGCTTCTCTTTCACCCTCTCTATCAAGGTGCTACTCTTTTTAAGCTTTGTGAGCTAGATATAGTCATTAATTATACCGCACAAGATTCACTACTGTTTGCAGGAAACATGGCGTTTTTGGGGCTTCTCTTGGTGGGGTTTCTCTCAGGTGTGTATGGGGACGGTGATGGTTGGATGGATGCTCATGCAACCTTCTACGGAGGGGGTGATGCCTCTGGCACAATGGGTGGAGCTTGTGGATATGGAAACCTGTATAGCGAGGGCTATGGGACTAACACAGCTGCTTTGAGCACGGCCTTGTTCAACAATGGTTTGAGATGTGGGGCTTGCTTCGAGATCAAGTGTGCCAATGACCAAAGGTGGTGCCTTCCGGGCTCAGTTGTGGTCACTGCCACCAATTTCTGCCCACCAAACAATGCCCTCCCAAATGATGCAGGTGGCTGGTGCAACCCACCCCTTCAACATTTTGATCTCTCACTGCCTGTCTTCCAACAAATAGCTCAATACCGCGCTGGCATAGTACCTGTAGCTTACAGAAGGGTCCCGTGTAAAAAGAGAGGAGGCATCAAGTTCAACATCAATGGTCATTCTTACTTCAACCTAGTCCTAATCACCAATGTTGGTGGTGCTGGTGATGTTCAAGCAGTTTCCATCAAAGGTTCAAGAATTGCTTGGCAACCAATGTCCAAAAACTGGGGTCAGAACTGGCAAAGCAACGCTTACCTCAATGGACAAAGCCTTTCCTTTAAGGTTACCATTAGTGACGGAAGCACCTTGGTCTCTTACAATGTTGCCCCTAATAACTGGTCCTTTGGCCAGACCTTTATAGGGCAACAATTCAATTAA 879 0.471 MPSAFNFLTTSLLLFHPLYQGATLFKLCELDIVINYTAQDSLLFAGNMAFLGLLLVGFLSGVYGDGDGWMDAHATFYGGGDASGTMGGACGYGNLYSEGYGTNTAALSTALFNNGLRCGACFEIKCANDQRWCLPGSVVVTATNFCPPNNALPNDAGGWCNPPLQHFDLSLPVFQQIAQYRAGIVPVAYRRVPCKKRGGIKFNINGHSYFNLVLITNVGGAGDVQAVSIKGSRIAWQPMSKNWGQNWQSNAYLNGQSLSFKVTISDGSTLVSYNVAPNNWSFGQTFIGQQFN 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1250 292 SUPERFAMILY Barwin-like endoglucanases 68 217 IPR036908 -
Ssu6g1250 292 PRINTS Expansin/Lol pI family signature 108 126 IPR007118 GO:0005576
Ssu6g1250 292 PRINTS Expansin/Lol pI family signature 86 104 IPR007118 GO:0005576
Ssu6g1250 292 PRINTS Expansin/Lol pI family signature 68 83 IPR007118 GO:0005576
Ssu6g1250 292 PRINTS Expansin/Lol pI family signature 182 198 IPR007118 GO:0005576
Ssu6g1250 292 PRINTS Expansin/Lol pI family signature 274 288 IPR007118 GO:0005576
Ssu6g1250 292 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576
Ssu6g1250 292 PRINTS Expansin signature 245 266 IPR002963 GO:0009664
Ssu6g1250 292 PRINTS Expansin signature 126 137 IPR002963 GO:0009664
Ssu6g1250 292 PRINTS Expansin signature 99 113 IPR002963 GO:0009664
Ssu6g1250 292 PRINTS Expansin signature 274 290 IPR002963 GO:0009664
Ssu6g1250 292 PRINTS Expansin signature 138 148 IPR002963 GO:0009664
Ssu6g1250 292 PRINTS Expansin signature 157 174 IPR002963 GO:0009664
Ssu6g1250 292 PRINTS Expansin signature 174 187 IPR002963 GO:0009664
Ssu6g1250 292 PRINTS Expansin signature 198 210 IPR002963 GO:0009664
Ssu6g1250 292 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Ssu6g1250 292 PANTHER EXPANSIN-A15 51 292 IPR002963 GO:0009664
Ssu6g1250 292 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 87 199 IPR007112 -
Ssu6g1250 292 PANTHER EXPANSIN 51 292 - -
Ssu6g1250 292 Pfam Lytic transglycolase 104 189 IPR009009 -
Ssu6g1250 292 SMART dpbb_1 104 189 IPR007112 -
Ssu6g1250 292 Gene3D - 60 195 IPR036908 -
Ssu6g1250 292 Pfam Expansin C-terminal domain 200 277 IPR007117 -
Ssu6g1250 292 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 209 288 IPR007117 -
Ssu6g1250 292 SUPERFAMILY PHL pollen allergen 196 287 IPR036749 -
Ssu6g1250 292 Gene3D - 199 291 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1250 Ssu-Chr6 20326958 20330194 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1250 43 291 Expansin Gene Family AT2G03090 75.000 1.76e-143 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1250 - K20628 gmx:100816718 483.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2098 1 59786414 59788616 Ssu6g1250 6 20326958 20330194 ECH
Ssu3g0448 3 10242972 10244079 Ssu6g1250 6 20326958 20330194 ECH
Ssu8g2293 8 59932052 59933496 Ssu6g1250 6 20326958 20330194 ECH
Ssu2g1578 2 63511984 63514639 Ssu6g1250 6 20326958 20330194 ECH
Ssu6g1250 6 20326958 20330194 Ssu6g1250 6 20326958 20330194 ECH