Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1249 ATGAAAAACGCTTCGGTGGTGTGTAAGGAAGACGATCAGATGGGTTTGCCTCCCGGATTTCGGTTCCACCCCACCGATGAGGAGCTTATAAGCCATTACCTCTACAAGAAGGTCATTGACACCAAGTTCTGCGCCAGGGCCATTGGAGAAGTCGACCTCAACAAGTCAGAGCCTTGGGATTTGCCATgTTTGTTTGTAGGTAAAGCGAAAATGGGAGAAAAGGAGTGGTACTTTTTCTGCGTGAGAGACAGAAAATACCCCACCGGGTTGAGAACCAACAGGGCCACCGAAGCGGGCTACTGGAAGGCCACGGGGAAAGACAAGGAGATTTTCAGGGGGAAATCGCTTGTTGGAATGAAGAAAACTCTGGTTTTCTACAGAGGTCGAGCGCCCAAAGGAGAGAAAAGCAACTGGGTCATGCACGAGTACAGACTCGAGGGCAAATTCTCTGTTCACAACCTCCCAAAAACTGCCAAGAACGAGTGGGTGATTTGCAGGGTGTTTCAGAAGAGCTCAGCTGGGAAGAAAACCCATATTTCGGGGATAATGAGGTTGGACTCTTTCGGGAATGAACTGGGTTCTTCTGCTCTGCCACCCCTCTCGGATTCCTCGCCTTCTATTTGTAACACTAAACCGCTCAATGATTCGGTTTACGTGCCCTGCTTCTCCAATCCAATTGATGTTCAAAGAAACCAAGAAGGGGTCTTCGATTCCTTCACCAACTCCATTTATGGGGTTTCTTCAAATCCTTTGGACATTCTTCCAAGAATGCCACCTTCTGCCTCACTCTACTCTCAACCTGCGCCTGATTTGACACTTCCAAGTTCTGTCTACACTCTGCAGGACCACACCATCCTGAGAGCTTTGTGTGAAAACAATGGTTACAAGTCAGAGAGGGACATGATCAGTGTCTCTCAGGAAACGGGTCTCACTACTGATGTCAACGCCGAAACCTCTTCGAATTTTGATATGGGTAGGAGGCCCTTTGACAATCACAATCATCTACCTGTTTCTGTTGCGCCATTGGATCTAGATGGTTTGTGGAATtactaa 1053 0.4767 MKNASVVCKEDDQMGLPPGFRFHPTDEELISHYLYKKVIDTKFCARAIGEVDLNKSEPWDLPCLFVGKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFRGKSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFSVHNLPKTAKNEWVICRVFQKSSAGKKTHISGIMRLDSFGNELGSSALPPLSDSSPSICNTKPLNDSVYVPCFSNPIDVQRNQEGVFDSFTNSIYGVSSNPLDILPRMPPSASLYSQPAPDLTLPSSVYTLQDHTILRALCENNGYKSERDMISVSQETGLTTDVNAETSSNFDMGRRPFDNHNHLPVSVAPLDLDGLWNY 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1249 350 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 347 - -
Ssu6g1249 350 SUPERFAMILY NAC domain 12 170 IPR036093 GO:0003677|GO:0006355
Ssu6g1249 350 Pfam No apical meristem (NAM) protein 17 145 IPR003441 GO:0003677|GO:0006355
Ssu6g1249 350 ProSiteProfiles NAC domain profile. 16 170 IPR003441 GO:0003677|GO:0006355
Ssu6g1249 350 Gene3D NAC domain 25 174 IPR036093 GO:0003677|GO:0006355
Ssu6g1249 350 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100 6 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1249 Ssu-Chr6 20292244 20293446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1249 14 350 NAC Transcription Factor Family AT5G07680 57.988 7.79e-134 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu6g1249 NAM 1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1249 - - gmx:100170719 655.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2094 1 59637514 59638999 Ssu6g1249 6 20292244 20293446 ECH
Ssu6g1249 6 20292244 20293446 Ssu6g1249 6 20292244 20293446 ECH