Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1236 ATGGCGCTGTTCAGAAGGTTCTTCTACCGGAAGCCGCCGGATCGGCTTCTGGAGATTTCCGAGAGAGTTTATGTTTTTGATTGTTGCTTCTCCACGGATGTCTTGGAAGAAGATGAATACAGAGTTTATATGGGGGGAATTGTGGCTCAGCTACAGGATCACTTTCCAGATGCTTCTTTCATGGTATTCAACTTCAGAGAAGGGGAGAGACGCAGCCAAATCTCAGACATATTTTCTCAGTATGACATGACAGTTATGGAGTACCCTCGGCAATACGAGGGTTGTCCCCTTCTGCCTCTAGAGATGATCCATCACTTCCTTCGATCAAGTGAAAGCTGGTTGTCTTTGGAGGGGCAACAGAATGTGCTTTTGATGCACTGTGAAAGGGGAGGTTGGCCCGTGCTGGCATTTATGTTAGCAGGTCTTCTGTTATACAGGAAACAGTACAGTGGGGAGCAGAAGACTCTTGAAATGGTCTACAAGCAAGCTCCAAGAGAACTATTACACCTTTTATCTCCTTTGAATCCACAGCCTTCTCATTTCAGATATCTTCAGTATATTTCCAGGAGACATTTGGGTTCTGAGTGGCCACCATCGGAAACACCCTTATATTTGGATTGTCTGATTCTTAGAGACCTTCCGTTATTTGATGATGGACAAGGTTGCAGGCCTGTTGTACGTGTTTATGGTCAGGACCCTTCAACTCCTGCCAATAGAAGTTCAAAGCTTCTTTTTTCAacttcaaaatccaaaaagcaTGTTCGACACTACCCACAGGCAGAGTGTATGCTCGTGAAAATTGACATCCATTGTCGTGTTCAAGGGGATGTGGTTCTTGAGTGCATACATTTAGGTGAAGATTTTGCTCGTGAGGATGTGATGTTTAGAGTTATGTTTCATACTGCATTTGTGCGGTCAAATATTTTGATTCTGAACCGTGatgaaattgatattttgtGGGATGCAAAGGACCAATTTCCCAAGGACTTCAAAGCAGAGGTGCTTTTTTTGGACGCTGATGCTGTTATACCTGATCTAACCACAGTCACGGTGAGTGAAGATGCAAATGAGACTGAGAGTGCCGAGACAGAAAGTGCTTCACCTGAGGAATTCTATGAAGTAGAAGAGATTTTCAGCAATGTAATTGATGCACAGGAAGGAAAGACAGAATATGATTCTCATGCTTTTCATGAGAATGCAGTGGATGATGAAAATCATAAAGAGGTCTGGAGGGAAGAGTCGGATCCTCATACTTTTGAGGATTGTACGCCAGATGACAGGATTCCCAAGCACGTTGACAAGATGGATTCTGGTATCAATGCAGTGAAAGACATCTCTATTGATGATGTGCACTATAAATTTGAAGGGAGCATGGATTCAGATCCTCATGCAGTGAAGGACATTGCTGTGGATGATGGAGAAATTAAGTCAGCTTCCACTGCAGTTATTTCTGATATGATGAAACCTCCTCTGGAAACGAAGGAAGTTACCATGGATGTGCACCAAGAATTAGCAGTTATACAAAATGAATATGATGAAGATAAGGAGGCAACAGAAAAGGAATTAGACTCCAAGGCAGGGCAGCAGATGCCTGATTTGTCTGAACAAAAATCTGGTAAACTACTTCCATCTACTGACAAGAAACAACTTCCATCTAACTTGAAGCCAGTTGGAGATACATATGCAGCAAAGCAAAAGATTAAACAGCAAGAAACCCATGGTTTTCAGGCAAAACAAGCTAAGCCAAATGCACCAACTAGGTGGATTCCTTCTAACAAGGGTTCTTATACAAATTCAATGCATGTCTATTATCCACCATCAAGGAATAATAGTGCACCAGCTGCACTGACAAATTTCTCCTCCACAAAGGAGAAAATGGAGGATGCCAAAACAAGATCTTTATCTGCTCCTGTTGTCTCTGCAGTTGTTGTTTCTATTGACAGGACAAATGACCTAAAAAGCCATAAGGTGGCCACTTCAAAATCTTCTGACTCTATAGCAGCAGAAATAGATGCAAAATGTCCACCATCATCATTGCCGTCAATTAAAGAGACATATTTTCAGTCAGATACTCAAGCACAACAGCAGATCTCAGAACAAGTGCTACAGCCTCCCCCAccccctccccctccccctccccctCCACCTCCGCCTTACAGTAGAAACTCTTCACATGTTTTTGAATCCTTATCATTAAAAGATGATGTATCAGCTCAAGACTCTCCATCTCCACTAGTATCACCATCTTTGGGTGGAAAGGGGCCCATCATggtgccaccaccaccaccttcaaCTTTAACATCATTTACTAGACAACCTGCAACTTCTCTTCCTTCCCCTCCACCCCACCCCCCACCGCCACCTCCACCCCCATTTTTTGGGCAAACTAAAGGGAGCTTAGTACCTTTTCCATCCCCTTGGAAATCTATGGCTTCATCAATAGTTGGAGAGACTAGTGGATCTTTAACAGTTCCTACACCCCCTCTTTCTTTTGCAAGCAGTGAAATTACATTGGAAGTTTCTGAAGTGGGTACTGCAGTGGCCCCTTCACAgcctcctcctccaccaccacctccaatGCCTCCTCCAAGGTATGAAGTTTCATCCATTCCTCCTCTAACAACATTAGCAGCACCTCTTCCAAAGCATGGAATTCCATCAAttcctcctcctccacctccGCCCCCATTTCCTACAGCTTCAAGACATAGGGCTCCACCCCCTCCTCCCCTGCCGCCCCCATTTGCATCACATAAagctccacctccacctcccccTCCTCCACCCTTGGCTAATTCACATATAGATTCACCTACACCACCTGTACCTCTTCCGCCACCTCCCCCTCCTTTTGGTAAAGCTTCACTACCTCCATCTCCACCTCCTTTTAATAGAACTccaccaccgccaccgccacctCCTTTGAGTAGAGCTCCACTGCCATCGCCTCCACCCCCTTTTAGTCAAGCTCCAACACTAACACCTCCTCCATTTCATAGATCTCCACCTACACCTCCCCCTCCACCACCTCTTCCTCCGTTAAGTGGAGCCCCACCTCCATCGATGTCCAGAGCCCCACCCCCCCCACCACCACCTTTTCCTCCATCAAGTGGAGCCCCACCTCCACCTCCCCCTCCACCGCCTTTTTCTCCATCAAGTGGAGCCCCACCTCCACCTCCCCCTCCACCGCCTTTTCCTCCATCAAGTGGAGCCCCACCTCCACCTCCCCCTCCAATGTCTAGAGCCCCACCTCCTCCACCTCCTCCAATTCATGGAgctccaccaccacctcctccaATGCCTGGagcaccacctccacctcctccaATGCCTGgagcaccacctccaccaccacctcctgGTGGTCGAGGACCACCTCCTCCTGGTGGTCGAGGtcctcctcctccacctccTCCTAGTGCTCCTGGCGCTCCTAGACCTCCTGGGGGTGGGCCTCCACCACCTCCGCCCTTAGGTGCAAAAGGTGCAAATGTTGCTGATGCAAGAGGGAGGGGACGTGGATACGCACGCCCTGCAGGAGCTGGTGCAATGGCACCCCGACGATCCTCTTTAAAGCCTTTGCATTGGAGCAAGGTTACAAGGGCACTACAAGGAAGTTTATGGGAAGAATTACAAAGACATGGAGAACCACAAATTGCACCAGAGTTTGATGTTTCAGAGCTAGAGAAGCTTTTCTCTGCAAATGTTCCAAAACCTACTGATTCTGGTGGCAAAGCTGGAGGGCGGCGCAAGTCTGTTGGATCTAAAACTGACAAAGTCCACTTGATTGACCTAAGGAGGGCTAATAATACTGAAATTATGCTCACTAAGGTTAAGATGCCACTTCCTGATATGATGGCTGCAGTACTGGCTATGGATGAGTCGGTACTGGATGTTGATCAAGTGGAAAATCtaattaagttttgtcctaCCAAAGAGGAGATGGAACTTTTGAAGGGATATACAGGTGACAAGGAGAGTTTGGGGAAGTGTGAACAGTATTTTCTGGAGCTGATGAAGGTGCCAAGGGTGGAGTCAAAACTAAGAGTATTTTCTTTCAAGATTCAGTTTGGTTCTCAGCTTACAGAATTTAAGAAGAGTTTAAACACTGTGAACTCTGCGTGTGAAGAGGTCCGGAAATCTGCTAAACTGAAGGAGATCATGAAGAAAATTCTTTATTTGGGTAATACATTGAATCAGGGAACAGCAAGGGGATCAGCAGTTGGATTCAAGTTGGATAGTCTTTTAAAGCTCACTGACACTCGTGCTTCTAACAGTAAAATGACACTGATGCATTATCTTTGCAAGGTGCTAGCTGATAAGTCACCCGGACTCCTTGATTTTCACCTGGACCTTGTTAGCCTGGAAGGTTCCACTAAgATACAATTGAAGTCATTAGCAGAAGAGATGCAGGCAATCATCAAGGGATTAGAAAAGGTTAAACAAGAATATGCTGCATCTGAAAATGATGGACCTGTGTCTGAAGTTTTCCGTAAGACATTGAAAGAATTTATAGTTGTAGCTGAGTCAGAGGTAGCATCTCTAACAAACCTATATTCTGTAGTGGGTAGAAATGCTGATGCACTAGCACTATATTTTGGTGAGGATCCTGCTCGTTGCCCATTTGAGCAAGTTACCACAACTCTGCTAAATTTTATAAGGTTGTTTCGGAAAGCACACGAAGAGAATTGCAAACAAGCAGAGTTAGAGAAGAAGAAAGCTGAGAAAGAGGCTGAAATGGAGAAGGCCAAGGGCGTTAACTTGACAAAGAAGGGTGCAAAAGATAGTTGA 4791 0.4262 MALFRRFFYRKPPDRLLEISERVYVFDCCFSTDVLEEDEYRVYMGGIVAQLQDHFPDASFMVFNFREGERRSQISDIFSQYDMTVMEYPRQYEGCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYSGEQKTLEMVYKQAPRELLHLLSPLNPQPSHFRYLQYISRRHLGSEWPPSETPLYLDCLILRDLPLFDDGQGCRPVVRVYGQDPSTPANRSSKLLFSTSKSKKHVRHYPQAECMLVKIDIHCRVQGDVVLECIHLGEDFAREDVMFRVMFHTAFVRSNILILNRDEIDILWDAKDQFPKDFKAEVLFLDADAVIPDLTTVTVSEDANETESAETESASPEEFYEVEEIFSNVIDAQEGKTEYDSHAFHENAVDDENHKEVWREESDPHTFEDCTPDDRIPKHVDKMDSGINAVKDISIDDVHYKFEGSMDSDPHAVKDIAVDDGEIKSASTAVISDMMKPPLETKEVTMDVHQELAVIQNEYDEDKEATEKELDSKAGQQMPDLSEQKSGKLLPSTDKKQLPSNLKPVGDTYAAKQKIKQQETHGFQAKQAKPNAPTRWIPSNKGSYTNSMHVYYPPSRNNSAPAALTNFSSTKEKMEDAKTRSLSAPVVSAVVVSIDRTNDLKSHKVATSKSSDSIAAEIDAKCPPSSLPSIKETYFQSDTQAQQQISEQVLQPPPPPPPPPPPPPPPYSRNSSHVFESLSLKDDVSAQDSPSPLVSPSLGGKGPIMVPPPPPSTLTSFTRQPATSLPSPPPHPPPPPPPPFFGQTKGSLVPFPSPWKSMASSIVGETSGSLTVPTPPLSFASSEITLEVSEVGTAVAPSQPPPPPPPPMPPPRYEVSSIPPLTTLAAPLPKHGIPSIPPPPPPPPFPTASRHRAPPPPPLPPPFASHKAPPPPPPPPPLANSHIDSPTPPVPLPPPPPPFGKASLPPSPPPFNRTPPPPPPPPLSRAPLPSPPPPFSQAPTLTPPPFHRSPPTPPPPPPLPPLSGAPPPSMSRAPPPPPPPFPPSSGAPPPPPPPPPFSPSSGAPPPPPPPPPFPPSSGAPPPPPPPMSRAPPPPPPPIHGAPPPPPPMPGAPPPPPPMPGAPPPPPPPGGRGPPPPGGRGPPPPPPPSAPGAPRPPGGGPPPPPPLGAKGANVADARGRGRGYARPAGAGAMAPRRSSLKPLHWSKVTRALQGSLWEELQRHGEPQIAPEFDVSELEKLFSANVPKPTDSGGKAGGRRKSVGSKTDKVHLIDLRRANNTEIMLTKVKMPLPDMMAAVLAMDESVLDVDQVENLIKFCPTKEEMELLKGYTGDKESLGKCEQYFLELMKVPRVESKLRVFSFKIQFGSQLTEFKKSLNTVNSACEEVRKSAKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRASNSKMTLMHYLCKVLADKSPGLLDFHLDLVSLEGSTKIQLKSLAEEMQAIIKGLEKVKQEYAASENDGPVSEVFRKTLKEFIVVAESEVASLTNLYSVVGRNADALALYFGEDPARCPFEQVTTTLLNFIRLFRKAHEENCKQAELEKKKAEKEAEMEKAKGVNLTKKGAKDS 1596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1236 1596 PANTHER FORMIN-J 1 799 - -
Ssu6g1236 1596 PANTHER FORMIN-J 1094 1588 - -
Ssu6g1236 1596 MobiDBLite consensus disorder prediction 1234 1255 - -
Ssu6g1236 1596 MobiDBLite consensus disorder prediction 681 700 - -
Ssu6g1236 1596 Pfam Formin Homology 2 Domain 1187 1556 IPR015425 -
Ssu6g1236 1596 MobiDBLite consensus disorder prediction 883 1160 - -
Ssu6g1236 1596 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 188 IPR029021 -
Ssu6g1236 1596 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 336 IPR035892 -
Ssu6g1236 1596 MobiDBLite consensus disorder prediction 1573 1596 - -
Ssu6g1236 1596 MobiDBLite consensus disorder prediction 701 721 - -
Ssu6g1236 1596 MobiDBLite consensus disorder prediction 529 551 - -
Ssu6g1236 1596 MobiDBLite consensus disorder prediction 848 868 - -
Ssu6g1236 1596 MobiDBLite consensus disorder prediction 509 554 - -
Ssu6g1236 1596 Pfam C2 domain of PTEN tumour-suppressor protein 199 336 IPR014020 -
Ssu6g1236 1596 MobiDBLite consensus disorder prediction 775 795 - -
Ssu6g1236 1596 Gene3D - 205 336 - -
Ssu6g1236 1596 Gene3D Formin, FH2 domain 1183 1568 IPR042201 -
Ssu6g1236 1596 Gene3D Protein tyrosine phosphatase superfamily 14 204 IPR029021 -
Ssu6g1236 1596 SMART PTEN_C2_2 198 338 IPR014020 -
Ssu6g1236 1596 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1134 1576 - -
Ssu6g1236 1596 MobiDBLite consensus disorder prediction 842 1187 - -
Ssu6g1236 1596 MobiDBLite consensus disorder prediction 722 746 - -
Ssu6g1236 1596 Coils Coil 1463 1483 - -
Ssu6g1236 1596 MobiDBLite consensus disorder prediction 572 592 - -
Ssu6g1236 1596 Coils Coil 1557 1591 - -
Ssu6g1236 1596 MobiDBLite consensus disorder prediction 651 811 - -
Ssu6g1236 1596 MobiDBLite consensus disorder prediction 509 526 - -
Ssu6g1236 1596 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1181 1582 IPR015425 -
Ssu6g1236 1596 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Ssu6g1236 1596 SMART it6_source 704 1596 IPR015425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1236 Ssu-Chr6 20184337 20198841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1236 1 640 FH2 protein (formin) Gene Family AT5G07740 61.846 0.0 805
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1236 - - gmx:100785475 1372.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1236 6 20184337 20198841 Ssu6g1236 6 20184337 20198841 ECH