Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1235 ATGACCGCAAGGCTTAGGCCCTTAACAAAGAACTGGGCAAACAATTGTGCTCTGATTGACGAGTCCAATGTGGTCCCTGGTTTGGTTCTGCTACTCTGGTGCAGCGATCTGTGGATGCAAGAACACACAGTGACGACGTTACTTAATTTGTCTCTTTTGGAAGAGAACAAGGCTCCGAAAACGAATGTTGGTGTTGTGAATTCGCTAATTTACATGCTCAAGATGAGGACAAAGACTTTGAAGCATAACACGGCGTggGGTTCAAATAGAGGGAAGAAGGACACGCTGATGACACTGTATAAGCTGTGTTCAGTGAGACAGAACAAGGAGAGGGTGGTGAGTGTCAAGGGTAAGGAAGGAGTGGGCAAGGGAAGGAGGAAGGAGGAAGGAGGAAGGAGGAGGAGTGGGCCAGGAAGGGGTAGTCATGGGGGAGAGAGTATTGAAGGAAGTTGGGGGTGA 459 0.4858 MTARLRPLTKNWANNCALIDESNVVPGLVLLLWCSDLWMQEHTVTTLLNLSLLEENKAPKTNVGVVNSLIYMLKMRTKTLKHNTAWGSNRGKKDTLMTLYKLCSVRQNKERVVSVKGKEGVGKGRRKEEGGRRRSGPGRGSHGGESIEGSWG 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1235 152 MobiDBLite consensus disorder prediction 114 152 - -
Ssu6g1235 152 SUPERFAMILY ARM repeat 5 115 IPR016024 -
Ssu6g1235 152 MobiDBLite consensus disorder prediction 114 139 - -
Ssu6g1235 152 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 87 114 - -
Ssu6g1235 152 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 2 85 - -
Ssu6g1235 152 Gene3D - 2 118 IPR011989 -
Ssu6g1235 152 PANTHER U BOX DOMAIN-CONTAINING 87 114 - -
Ssu6g1235 152 PANTHER U BOX DOMAIN-CONTAINING 2 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1235 Ssu-Chr6 20178688 20179235 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1235 3 113 U-box Gene Family AT3G46510 29.787 3.54e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1235 - - gmx:100801642 113.62