Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1234 ATGGGGTGCGTGGTAGCGAAGCAGGCGGTGTCGGTGACGCCGGCGATTGAGCACTCGGTTGAGTCGGACAGGAATAGGAAGAAGAAGACTGAGTCAGTGGGAGCGAGTAGGAGCGAGTTGGGTGAGTCAGGGAGAGCGAGTTCCAATGCTGGAAGTGAGTCTCTTAGCTTCAGATTGGGGAACCTCAGTAAGTACGTCGAGGGAGAGCAGGCGGCGGCGGGTTGGCCGGCGTGGCTCAGTGCCGTCGCCTGTGAAGCCATTCACGGTTGGGTGCCTCTTCGTGCTGACGCATTTGAGAAACTTGATAAGATTGGGCAGGGCACATATAGTAGTGTTTTCCGAGCAAAGGAGATTGAGACGGGGAAGATAGTGGCTTTGAAGAAGGTGAGATTTGACAATTTTGAGCCAGAAAGTGTGAGGTTTATGGCGCGAGAAATAATGATTCTTAGAAGGCTTGATCATCCAAACATCATTAAACTGGAGGGCTTGATTACTTCTAGATTGTCTTGTAGCATATACCTTGTATTTGAGTACATGGAGCACGACATCACGGGGCTCTTGTCTAGACCAGAAATCAAGTTTAGTGAATCACAGATCAAATGCTACATGAAACAGTTGTTATCTGGTCTTGAGCATTGTCACTCGCGGAGTGTAATGCACCGGGACATCAAAGGATCAAATCTTTTGGTGAATAATGAAGGGATATTGAAGGTGGCAGATTTTGGATTGGCAAATTTCTCCAATTCTGGGAACAAGCAGCCCCTCACTAGTCGTGTTGTCACCTTATGGTACCGTCCTCCAGAACTTTTGCTCGGTTCAACAAATTATGGTCCATCTGTGGATCTCTGGAGTGTTGGTTGTGTATTTGCAGAATTACTAATTGGGAAGCCTATACTTCAGGGGAGAACTGAGGTTGAGCAATTGCACAAAATTTTCAAGCTTTGTGGCTCCCCACCCGATGAATACTGGAAAAAGACCAGACTTCCTCATGCAACATTGTTCAAGCCACAGCAACCATATGATAGTTGCCTCCGAGAGACATTTAAAGATTTTCATGCATCCAGTGTAAATCTTCTACAAACTCTTCTTTCTGTTGAACCAAGCAAACGTGGAACTGCCTCATCTGCTCTCTCATCGGATtatttcaaaacaaaaccttATGCATGTGACCCATCAAGCTTACCAATATACCCACCTAGCAAGGAGATTGATGCGAAACATGAGGAGGAGTCAAGAAGGAAAAAGATTGGTGGACGAGTTTGCGGACCAGAATCAAGAAAACCATCAAGAAAGCCCCTAGGACTGAGTAAATTAGCCCCAGCAGAGGATTTGACAACCCAAACTCAAACTTCCCAAAAGATGGATGACAGATCTGTCCACATCCTCAAAGAAGAGGACTCTAACACAGGTGAGGAGGCACCAAAGCAGTCTAGTGGTAAACCAGAAGATGATTCCCATATGAAAAATGCATCTCAAGTAGATATGCCCTTTCCTGGACCATTGCAAGTTTCAAAATCAAGTGGCTTTGCATGGGCAAAAAGGCGTAGAGATGACACTTCAATTAGATCCCACAGTCGGTCTATTTCTAGAGGATATATCTTTAATTCATTAGAAACCTGTACACTAAATTCAAGGAATAATTCTGAATCCAGAAACTATGAAAATAAGGAGTTTTTTGGGACACGCACCAACTCTGGGGGCCATGACCTACTTGAAATTTCTAAGCTTGCCATGCAAAATCAATGGAGTAAGTTTGATCGTCCAGATTCATTTGATACTTCTGAGGAGTACCATTCACAAGAACTGTCTATGGCGCTTTATAACAGGCAAGATTCACTATCCAAGAGAAGTAACttgAGTTACCAAGATCAAGGAGAAAAGGTAGAGTTTTCTGGGCCTCTGCTATCTCAAATGCACACAGTTGATGAGCTCTTAGAAAGACATGAGCGTCACATCCGGCGTACTGTCAGAAGATCATGGTTTCAGAGAGGTAAAAAACAAGGGAAGTAA 2010 0.4423 MGCVVAKQAVSVTPAIEHSVESDRNRKKKTESVGASRSELGESGRASSNAGSESLSFRLGNLSKYVEGEQAAAGWPAWLSAVACEAIHGWVPLRADAFEKLDKIGQGTYSSVFRAKEIETGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMEHDITGLLSRPEIKFSESQIKCYMKQLLSGLEHCHSRSVMHRDIKGSNLLVNNEGILKVADFGLANFSNSGNKQPLTSRVVTLWYRPPELLLGSTNYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKTRLPHATLFKPQQPYDSCLRETFKDFHASSVNLLQTLLSVEPSKRGTASSALSSDYFKTKPYACDPSSLPIYPPSKEIDAKHEEESRRKKIGGRVCGPESRKPSRKPLGLSKLAPAEDLTTQTQTSQKMDDRSVHILKEEDSNTGEEAPKQSSGKPEDDSHMKNASQVDMPFPGPLQVSKSSGFAWAKRRRDDTSIRSHSRSISRGYIFNSLETCTLNSRNNSESRNYENKEFFGTRTNSGGHDLLEISKLAMQNQWSKFDRPDSFDTSEEYHSQELSMALYNRQDSLSKRSNLSYQDQGEKVEFSGPLLSQMHTVDELLERHERHIRRTVRRSWFQRGKKQGK 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1234 669 ProSitePatterns Protein kinases ATP-binding region signature. 104 127 IPR017441 GO:0005524
Ssu6g1234 669 Gene3D Phosphorylase Kinase; domain 1 85 180 - -
Ssu6g1234 669 PANTHER CELL DIVISION PROTEIN KINASE 30 662 - -
Ssu6g1234 669 MobiDBLite consensus disorder prediction 456 489 - -
Ssu6g1234 669 MobiDBLite consensus disorder prediction 16 53 - -
Ssu6g1234 669 CDD STKc_CDK9_like 98 382 - -
Ssu6g1234 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Ssu6g1234 669 SMART serkin_6 98 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1234 669 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 30 662 - -
Ssu6g1234 669 ProSiteProfiles Protein kinase domain profile. 98 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1234 669 MobiDBLite consensus disorder prediction 393 501 - -
Ssu6g1234 669 MobiDBLite consensus disorder prediction 401 426 - -
Ssu6g1234 669 SUPERFAMILY Protein kinase-like (PK-like) 91 389 IPR011009 -
Ssu6g1234 669 Gene3D Transferase(Phosphotransferase) domain 1 181 421 - -
Ssu6g1234 669 Pfam Protein kinase domain 98 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1234 669 MobiDBLite consensus disorder prediction 19 35 - -
Ssu6g1234 669 MobiDBLite consensus disorder prediction 441 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1234 Ssu-Chr6 20148335 20153912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1234 90 414 Core Cell Cycle Gene Families AT5G10270 51.026 1.76e-115 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Ssu6g1234 Pkinase 2.8e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1234 - - gmx:100784406 1214.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2079 1 59282632 59288405 Ssu6g1234 6 20148335 20153912 ECH
Ssu6g1234 6 20148335 20153912 Ssu6g1234 6 20148335 20153912 ECH