Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1229 ATGAAGTTTGCGAGGCTCAAACAGTTTTCTGTTGCGGAGAATCATCTCAGTGGGACCATTCCTTTGGAAGCTTTTCCTTTGAATTGTAGCCTTGAAGAACTAGACCTTTCACAAAATGGATTTGTTGGTGAGGCACCTAAGGGGGTTGCTAACTGCAAGAATTTAAGCATTCTGAATCTTTCTAGTAACGAGTTTACAGGGGGTATTCCCGTTGAAATAGGATCCATTTCGGGCCTCAAAGCATTGTACTTGGGGAACAACAGCTTTTCAAGGGAGATTCCTGAGGCCCTTTTGAACTTGACCAATTTGGTCTTCTTGGATTTGAGCAGAAACCGATTTGGTGGGGACATACAAAAGATATTTGGGAAATTTAAGCAAGTGAGCTTTCTTCTATTGCACTCAAATAATTACACTGGAGGATTGAGATCCTCAGGAATTCTCACATTGCCAAACATTTGGCGGTTAGACCTTAGCTACAACAACTTTTCAGGACCATTACCTGTTGAGATCTCTCAAATATCAAGTCTGAAGTTTCTAATATTATCCTACAACCAATTCAATGGATCCATTCCACCCGAATTTGGAAACATGACTCAACTGCAAGCACTTGACCTTGCCTTCAACAATTTGAATGGGTCTATACCTCCAAGCCTTGGAAACTTGAGTTCTCTCTTGTGGTTGATGCTTGCAGACAATTCTTTAACTGGAGAAATCCCTCCAGAGTTGGGGAACTGTTCAAGCTTGTTATGGTTAAACCTTGCCAACAATAAGCTCTCTGGTAATTTGCCTTCTGAGCTGTCCAAAATTGGAAGGAATGCCACGACCACATTTGAATCAAATAGGGAAAACTATCGAATGATTGCTGGCTCTGGTGAATGTTTAACAATGAGGAGATGGATACCAGCAGATTACCCTCCATTCAGCTTTGTGTATAGCCTCTTAACAAGGAAAAACTGTAGAGACCTTTGGGACAAATTGCTCAAAGGGTATGGTATTTTCCCATTTTGCACGCCTGGTTCTTCCTTTCGCTCACCGCAGATATCCGGGTATGTTCAGCTAAGCTCAAACCAGCTCACTGGTGAAATCCCTTCAGAGATTGGGACAATGGTGAACTTCAGCATGCTGCACTTGGGGTTCAACAACTTCTCAGGGAAGTTCCCTCCAGAGATGGGAAGTATTCCCCTTGTGGTGCTAAACATGACAAGAAACAAGTTTTCAGGTGAAATTCCCCAAGAAATTGGCAAGATGAAATGTTTGATGAATCTGGACTTGTCATACAACAACTTCTCTGGGACGTTTCCCACAAGTTTGAACAAATTGACAGAGCTTAACAAGTTCAACATCTCATACAACCCCTTCATATCCGGTGAGGTACCGTCAACGGGACAGTTTGCTACCTTTGAGAAAGATTCATATTTAGGTGACACCTTCTTGATCCTTCCCGAGTTTATTGACAACATCGCCAATAATAGAAACACCCCCCCTCGCAAAGACCATAAAAAGCCCACAAAACTGTCTGTGTTTTTGGTGTTTCTCGTTATAACACTTGTTTTTACGACATTTGGGCTTCTTGCTATCATAGTCTGTGTGGCAGTGAAGAGCCCATCAGAGGAACCAAGATACCTCTTGAGGGATACAAAACAGTGGCATGATTCTAGCAGCTCTGGATCCTCCCCATGGATGTCTGACACAGTTAAGGTTATCCGTTTGAACAAGACAGCTTTCACACATGACGACATTCTGAAAGCAACTAGCAGCTTCTCGGAGGACAGAATTATAGGAAAAGGAGGGTTTGGAACAGTGTACAAGGGAGTGTTTTCAGATGGCAGACACGTGGCAGTGAAGAAGCTCCAGAGGGAAGGCCTCGAGGGTGAGAAGGAATTCAAGGCTGAAATGGAGGTTCTGAGTGGTCACGGGTTTGGTTGGCCTCACCCAAACCTGGTCACACTCTACGGTTGGTGCCTAAATGGTTCAGAGAAGATACTGATTTATGAGTACATAGAGGGTGGAAGCCTGGAGGATCTAGTCACTGATAGAACACGTTTGACATGGAAGAGGAGGCTAGAAGTGGCAACTGATGTGGCACGTGCACTAGTCTATTTGCACCATGAGTGCTACCCTTCTGTTGTGCATAGAGATGTGAAGGCCAGTAATGTGCTTCTAGACAGGGATGGGAAGGCCAAGGTTACTGATTTTGGGCTTGCTAGAGTGGTTGATGCTGGGGATAGTCATGTGAGTACTATGGTGGCTGGGACAGTGGGCTATGTTGCACCTGAATATGGACACACGTGGCAGGCTACTACAAAAGGAGATGTGTACAGTTTTGGGGTGTTGGTCATGGAGCTGGCAACAGCGAGAAGAGCAGTGGATGGAGGGGAAGAGTGTTTGGTGGAATGGGCTAGGCGTGTTATGGGTTATGGGCGACATCATCATGGGTTGAGGCGTCCGGTACCAGTTTTGCTAATGGGTTCTGGGCTTGTTGGTGGGGCTGAGGAGATGGGGGAATTGCTAAGGATTGGGGTGAGGTGCACAGCTGATGCACCGCACGCTAGGCCCAACATGAAGGAGGTTCTTGCTATGCTGATTAAGATATCCAACCCCAAGGGGGACTCGAGTTATGGACACCTTGTTTAG 2634 0.4529 MKFARLKQFSVAENHLSGTIPLEAFPLNCSLEELDLSQNGFVGEAPKGVANCKNLSILNLSSNEFTGGIPVEIGSISGLKALYLGNNSFSREIPEALLNLTNLVFLDLSRNRFGGDIQKIFGKFKQVSFLLLHSNNYTGGLRSSGILTLPNIWRLDLSYNNFSGPLPVEISQISSLKFLILSYNQFNGSIPPEFGNMTQLQALDLAFNNLNGSIPPSLGNLSSLLWLMLADNSLTGEIPPELGNCSSLLWLNLANNKLSGNLPSELSKIGRNATTTFESNRENYRMIAGSGECLTMRRWIPADYPPFSFVYSLLTRKNCRDLWDKLLKGYGIFPFCTPGSSFRSPQISGYVQLSSNQLTGEIPSEIGTMVNFSMLHLGFNNFSGKFPPEMGSIPLVVLNMTRNKFSGEIPQEIGKMKCLMNLDLSYNNFSGTFPTSLNKLTELNKFNISYNPFISGEVPSTGQFATFEKDSYLGDTFLILPEFIDNIANNRNTPPRKDHKKPTKLSVFLVFLVITLVFTTFGLLAIIVCVAVKSPSEEPRYLLRDTKQWHDSSSSGSSPWMSDTVKVIRLNKTAFTHDDILKATSSFSEDRIIGKGGFGTVYKGVFSDGRHVAVKKLQREGLEGEKEFKAEMEVLSGHGFGWPHPNLVTLYGWCLNGSEKILIYEYIEGGSLEDLVTDRTRLTWKRRLEVATDVARALVYLHHECYPSVVHRDVKASNVLLDRDGKAKVTDFGLARVVDAGDSHVSTMVAGTVGYVAPEYGHTWQATTKGDVYSFGVLVMELATARRAVDGGEECLVEWARRVMGYGRHHHGLRRPVPVLLMGSGLVGGAEEMGELLRIGVRCTADAPHARPNMKEVLAMLIKISNPKGDSSYGHLV 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1229 877 SUPERFAMILY L domain-like 336 459 - -
Ssu6g1229 877 Gene3D Ribonuclease Inhibitor 351 392 IPR032675 -
Ssu6g1229 877 Gene3D Ribonuclease Inhibitor 395 475 IPR032675 -
Ssu6g1229 877 CDD STKc_IRAK 593 864 - -
Ssu6g1229 877 Gene3D Phosphorylase Kinase; domain 1 552 666 - -
Ssu6g1229 877 SUPERFAMILY Protein kinase-like (PK-like) 569 863 IPR011009 -
Ssu6g1229 877 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 3 868 - -
Ssu6g1229 877 SMART LRR_typ_2 76 100 IPR003591 -
Ssu6g1229 877 SMART LRR_typ_2 197 220 IPR003591 -
Ssu6g1229 877 SMART LRR_typ_2 173 196 IPR003591 -
Ssu6g1229 877 SMART LRR_typ_2 221 245 IPR003591 -
Ssu6g1229 877 Pfam Protein kinase domain 588 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1229 877 Gene3D Ribonuclease Inhibitor 113 318 IPR032675 -
Ssu6g1229 877 ProSitePatterns Protein kinases ATP-binding region signature. 593 616 IPR017441 GO:0005524
Ssu6g1229 877 Gene3D Ribonuclease Inhibitor 1 112 IPR032675 -
Ssu6g1229 877 SUPERFAMILY L domain-like 3 265 - -
Ssu6g1229 877 ProSiteProfiles Protein kinase domain profile. 587 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1229 877 Gene3D Transferase(Phosphotransferase) domain 1 667 873 - -
Ssu6g1229 877 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 868 - -
Ssu6g1229 877 SMART serkin_6 587 868 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1229 877 ProSitePatterns Serine/Threonine protein kinases active-site signature. 709 721 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1229 Ssu-Chr6 20078897 20081530 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1229 3 861 Receptor kinase-like Gene Family AT1G55610 33.700 4.51e-134 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Ssu6g1229 Pkinase 8.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1229 - - gmx:100816573 1554.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1229 6 20078897 20081530 Ssu6g1229 6 20078897 20081530 ECH