Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu6g1217 | ATGGAAGGAGATCAAATTCGAGAATTCAAACACGCGTGCAAGTTCTGCGGCAAGAGCTTCCCTTGTGGCAGATCCCTGGGGGGTCACATGAGGTCTCatatcaccaacttgtcatctGAGGAACACGAAAAAGAGAAGCTTCCACCGAGGAAGCTCTCATCATCTCTCAACAATGGTGAAGACAGAGATTCTGAAGCTGCAACCAACGCTGGGTATGGTCTCAGAGAGAACCCCAAGAAGACATGGAGAATCTCGGATTACTCGGGCGAAGACGCTTTGGTGTTTGACAAGTTATGCAAAGAGTGTGGCAAAGGGTTCCACTCTTGGAAGGCCTTGTTTGGCCACATGAAATGCCACTCCGAGAAAGAAAGAGCTTCCAACAGCTTGGAAGATCAAGATTCTTGGACCAATGCTAGTTCTGGCCAGAAGGTGGTTATGGATAGCCAATCTGACAACGAAGCAACTGCTCCAAATAGGAGAAGAAGGTCCAAGAGAAGAACGAGGTACACGGTTGCTTCTGCTGCAGCAGCTTCTTTGGTTGTGTCTTTTGCGAACCCTTCATCATCTCTCTCTGAGGTTGAGGAGCAAGAGCAAGAGGAGGTTGCTATGAGCTTGATGATGCTTAGTAGGGATGTGAGTCCTTGGAGTGGTCCTCATTCTGTTGCTGAGTCCTCTGACAATAACTCTGCTTATTTCGAAGCTCCATCTTCAGTTCGAACTAATCTGGTTGCCAAATTTGATGGCAACAAGAACTTCACTCCCAACGCAGCAAAACTGATCAAGCAAAGTGATGACAAGTGGGAGGTCGGTAATTCGGAAAATCCCAACTCAATCAGAGGGAAGAGTTCACAACTTTTGACTACTATTACTGCTACTGCTGAGATTCCTGAATATGGATTTAGAGTGAACAAAAGTGGAGTTTCCCATAAAGGGTATGAAAAGGCCATCAAGTCTGAGCTTGAAAATGTGTCTGCATTGGAGGATTCTGAAGGGGAACATGGGAGGAGCAGAGTCAATGGAACAGAATCAGTTTTATCAAAGTCGGCTACTACTGGCAACAAGTACAGTTCAATCAAGACAAAGTTTCTCGGTTCtgaattgaaatcaaataagaaCTGGGTGGACAAGGCATCGGAAGCTGAATCTGGCAAGAACTCTAACAAGAGAGGGAGGTTCGAGTGTACCACTTGCAACAAAATCTTCCactcataccaagctcttggaggcCATAGAGCTAGTCATAAGAAGATCAAAGGCTGTTTTGCTTCAAGGAATGAGAGCAGTGAAAACAGCATTGAAACTGATCTCTCTCCTGAGCCAGCAACGGAAAACAAGCTCATGAAGAACAGTGACAATGAGTATCTGGTGGAGCATGAACATGTTGCTGGTCTTCATAATGAGGTGGAAACTGTTACCGAGTCCAAGAAGATCAAGAGGCATGAGTGCCCAATTTGCTTCAAGGTTTTTCCATCTGGCCAAGCCTTGGGTGGCCATAAGAGATCTCATATGGCTGGTGGGTCTGAGAGTAGAAGCTTTCAAACAATTGTAATTCAGGAACCAGAGCCAGAAATTAGGGACTTCCTTGATCTTAATCTCCCTGCTGCTACTGAGGAAGAAAGCAATAGCCATGCTGACTCTAACAGACCCTGGTGGGTAGTAGAAGACAACCACAAACAGGAAGCACTGGTAGGCCTGATCTCATAG | 1704 | 0.4437 | MEGDQIREFKHACKFCGKSFPCGRSLGGHMRSHITNLSSEEHEKEKLPPRKLSSSLNNGEDRDSEAATNAGYGLRENPKKTWRISDYSGEDALVFDKLCKECGKGFHSWKALFGHMKCHSEKERASNSLEDQDSWTNASSGQKVVMDSQSDNEATAPNRRRRSKRRTRYTVASAAAASLVVSFANPSSSLSEVEEQEQEEVAMSLMMLSRDVSPWSGPHSVAESSDNNSAYFEAPSSVRTNLVAKFDGNKNFTPNAAKLIKQSDDKWEVGNSENPNSIRGKSSQLLTTITATAEIPEYGFRVNKSGVSHKGYEKAIKSELENVSALEDSEGEHGRSRVNGTESVLSKSATTGNKYSSIKTKFLGSELKSNKNWVDKASEAESGKNSNKRGRFECTTCNKIFHSYQALGGHRASHKKIKGCFASRNESSENSIETDLSPEPATENKLMKNSDNEYLVEHEHVAGLHNEVETVTESKKIKRHECPICFKVFPSGQALGGHKRSHMAGGSESRSFQTIVIQEPEPEIRDFLDLNLPAATEEESNSHADSNRPWWVVEDNHKQEALVGLIS | 567 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu6g1217 | 567 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 1 | 567 | - | - | |
| Ssu6g1217 | 567 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 99 | 119 | IPR013087 | - | |
| Ssu6g1217 | 567 | Gene3D | Classic Zinc Finger | 389 | 502 | - | - | |
| Ssu6g1217 | 567 | SUPERFAMILY | beta-beta-alpha zinc fingers | 392 | 502 | IPR036236 | - | |
| Ssu6g1217 | 567 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 97 | 124 | IPR013087 | - | |
| Ssu6g1217 | 567 | SMART | c2h2final6 | 97 | 119 | IPR013087 | - | |
| Ssu6g1217 | 567 | SMART | c2h2final6 | 11 | 33 | IPR013087 | - | |
| Ssu6g1217 | 567 | SMART | c2h2final6 | 480 | 502 | IPR013087 | - | |
| Ssu6g1217 | 567 | SMART | c2h2final6 | 392 | 414 | IPR013087 | - | |
| Ssu6g1217 | 567 | PANTHER | C2H2-TYPE ZINC FINGER PROTEIN | 1 | 567 | - | - | |
| Ssu6g1217 | 567 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 482 | 502 | IPR013087 | - | |
| Ssu6g1217 | 567 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 394 | 414 | IPR013087 | - | |
| Ssu6g1217 | 567 | MobiDBLite | consensus disorder prediction | 130 | 153 | - | - | |
| Ssu6g1217 | 567 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 13 | 33 | IPR013087 | - | |
| Ssu6g1217 | 567 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 392 | 419 | IPR013087 | - | |
| Ssu6g1217 | 567 | Pfam | C2H2-type zinc finger | 391 | 416 | - | - | |
| Ssu6g1217 | 567 | Pfam | C2H2-type zinc finger | 11 | 33 | - | - | |
| Ssu6g1217 | 567 | Pfam | C2H2-type zinc finger | 99 | 121 | - | - | |
| Ssu6g1217 | 567 | Pfam | C2H2-type zinc finger | 479 | 504 | - | - | |
| Ssu6g1217 | 567 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 11 | 33 | IPR013087 | - | |
| Ssu6g1217 | 567 | MobiDBLite | consensus disorder prediction | 125 | 168 | - | - | |
| Ssu6g1217 | 567 | SUPERFAMILY | beta-beta-alpha zinc fingers | 11 | 119 | IPR036236 | - | |
| Ssu6g1217 | 567 | MobiDBLite | consensus disorder prediction | 324 | 345 | - | - | |
| Ssu6g1217 | 567 | MobiDBLite | consensus disorder prediction | 38 | 74 | - | - | |
| Ssu6g1217 | 567 | Gene3D | Classic Zinc Finger | 2 | 124 | - | - | |
| Ssu6g1217 | 567 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 480 | 502 | IPR013087 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu6g1217 | Ssu-Chr6 | 19911975 | 19913678 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ssu6g1217 | 415 | 538 | C2H2 Transcription Factor Family | AT1G26610 | 44.444 | 1.70e-16 | 80.5 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Ssu6g1217 | zf-C2H2_6 | 1.1e-11 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu6g1217 | - | - | gmx:102666705 | 893.264 |