Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1204 ATGGCGTCGGCGAAGCGATGCCACTACGAAGTCCTGGGTCTCCCCCGCGACTGTGCTCCCGACGAGATCCGATCGGCGTACCGTCGTCTCGCCCTTCAGCGCCACCCGGACAAGCTTGTGAAATCGGGTCTCTCCCAGGAGGAAGCCACCGCGCGGTTCCAGGAACTCCAACACGCCTACGAAGTCCTCTCCGACCCGAAGGAACGCGCCTGGTACGATTCCCACCGCTCCCAGATCCTCTTCTCCGATCCCAACTCGCTCTCCAACTCGGTCGTCCCGGacctcttctccttcttctccaACACCGTCTATTCCGGCTACTCCGACGCCGGCAGGGGATTCTACAAGGTCTACTCCGACGTCTTCGACAAAATCCACGCCAGCGAGATCAACTTCGCGAGGAAATTGGGCCTCGGCGTGGACGCGGTGAAACAGGCCCCCGTCATGGGGAACTTGGACAGCCCCTACGCTCAGGTTACTGCGTTTTATAGCTACTGGTTAGGGTTTTCTACGGTGATGGATTTTTGTTGGGTTGATGAGTACGATGCTATGGCGGGGCCGAACCGGAAGTCGAGGAGGCTCATGGAGGAGGAGAATAACAAGGTGAGGAGGAAGGCGAGGAGGGAGTATAATGACACTGTGAGGAGGTTGGGGGATTTTGTCAAGAAGAGGGATAAGAGGGTGATTGATATGAGGGTGAAGAGGAGTGTGGAGATGGAGaggaagaaggaggaggagagggagaggaagaagaGGTTGGAGAAGGAGAGGAAGGAGAGGGCCATGGCTTATGAGGAGCCTGAGTGGGCTAGGattgaggaggaggaggaggaggaggagtgGGTTGAGGAGAAGAAGAATGAGAAGGAGTTCTATTGTGTGCTGTGTGGGAAGAAGTTTAAGAGTGAGAAGCAGTGGAAAAATCATGAGCAGTCCAAGAAGCATAAGGAGAGGGTTGCCGAGTTTAGGGATTCGATTGGCAGTGAAGAGGATTTGGAAGGGGAAGGAGAAGGAAATGAGAGAGCGGAGAGTGAGGAAGACGGGGTTGGTGATTTGGAGGGGAGCTTTAGGGATGGTCTCAATGTTGGAGAGGGAGAGACTAGAAATGGGGATGAACTGAGTGATGATGATGGTGGGGAAGAGGCGGGTGCGTCAGTTAATTTTGGTGATGATGGcaatgaagatgatgatgatgatgatgaaaatggtgTTCTTGGAGCAATGGTGGCTGGGCACAAGAACAGAAAAGCGCATGCTTCAGCACACAAACAACCCAAGGCTTCAGTAGCCCCATCTCAAATCGAAAATGAGGATGATGAGGTTGGCTCTATGGAATATAACAACCGAAAGAGCACAAGGAAGAAACGTGGAGCCAAGAAAGAGAAGGGTAGGAAAAATTGGGAAGAATCTCATGGGGCCGCTGCTAGTGGCAACAATGAGAATATAAACAGTAATGGAAATGATAATTCTCATGCAGAGGAGCATTATTCCCAACATTATGTGGAAAATGAGGATAATGGTATGGAAAATGAGCAGGTTGGTCGAGATAAGAAGATTTCAAATCAACCAGCAGATAAAAAAGGAGCTGGCAAGGACACAAAAACCAAAGCAAAAATTTCATCCAAAGGTAGAAAAGCGAAGGTGACATCAAAGAATGTTGGCAATATTTGTGAGGCGTGTGAAGAGGAGTTTGAGTCAAGgaataaattacataaacatcTTGGCGATTCTGGGCATGCGACAATAAAAGGTCGATAA 1758 0.4687 MASAKRCHYEVLGLPRDCAPDEIRSAYRRLALQRHPDKLVKSGLSQEEATARFQELQHAYEVLSDPKERAWYDSHRSQILFSDPNSLSNSVVPDLFSFFSNTVYSGYSDAGRGFYKVYSDVFDKIHASEINFARKLGLGVDAVKQAPVMGNLDSPYAQVTAFYSYWLGFSTVMDFCWVDEYDAMAGPNRKSRRLMEEENNKVRRKARREYNDTVRRLGDFVKKRDKRVIDMRVKRSVEMERKKEEERERKKRLEKERKERAMAYEEPEWARIEEEEEEEEWVEEKKNEKEFYCVLCGKKFKSEKQWKNHEQSKKHKERVAEFRDSIGSEEDLEGEGEGNERAESEEDGVGDLEGSFRDGLNVGEGETRNGDELSDDDGGEEAGASVNFGDDGNEDDDDDDENGVLGAMVAGHKNRKAHASAHKQPKASVAPSQIENEDDEVGSMEYNNRKSTRKKRGAKKEKGRKNWEESHGAAASGNNENINSNGNDNSHAEEHYSQHYVENEDNGMENEQVGRDKKISNQPADKKGAGKDTKTKAKISSKGRKAKVTSKNVGNICEACEEEFESRNKLHKHLGDSGHATIKGR 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1204 585 SUPERFAMILY beta-beta-alpha zinc fingers 282 332 IPR036236 -
Ssu6g1204 585 MobiDBLite consensus disorder prediction 492 539 - -
Ssu6g1204 585 Pfam Zinc-finger double-stranded RNA-binding 291 316 IPR022755 -
Ssu6g1204 585 Pfam DnaJ domain 8 73 IPR001623 -
Ssu6g1204 585 ProSitePatterns Zinc finger C2H2 type domain signature. 557 579 IPR013087 -
Ssu6g1204 585 PRINTS DnaJ domain signature 9 27 IPR001623 -
Ssu6g1204 585 PRINTS DnaJ domain signature 48 68 IPR001623 -
Ssu6g1204 585 PRINTS DnaJ domain signature 27 42 IPR001623 -
Ssu6g1204 585 SUPERFAMILY Chaperone J-domain 4 79 IPR036869 -
Ssu6g1204 585 SMART c2h2final6 555 579 IPR013087 -
Ssu6g1204 585 SMART c2h2final6 291 315 IPR013087 -
Ssu6g1204 585 MobiDBLite consensus disorder prediction 303 551 - -
Ssu6g1204 585 ProSiteProfiles Zinc finger C2H2 type domain profile. 291 320 IPR013087 -
Ssu6g1204 585 Gene3D DnaJ domain 1 88 IPR036869 -
Ssu6g1204 585 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 1 585 IPR044648 -
Ssu6g1204 585 MobiDBLite consensus disorder prediction 303 329 - -
Ssu6g1204 585 ProSitePatterns Zinc finger C2H2 type domain signature. 293 315 IPR013087 -
Ssu6g1204 585 CDD DnaJ 7 65 IPR001623 -
Ssu6g1204 585 MobiDBLite consensus disorder prediction 472 491 - -
Ssu6g1204 585 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Ssu6g1204 585 Coils Coil 236 263 - -
Ssu6g1204 585 Gene3D Classic Zinc Finger 276 339 - -
Ssu6g1204 585 SMART ZnF_U1_5 288 322 IPR003604 GO:0003676|GO:0008270
Ssu6g1204 585 SMART dnaj_3 6 68 IPR001623 -
Ssu6g1204 585 ProSiteProfiles dnaJ domain profile. 7 76 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1204 Ssu-Chr6 19602589 19605321 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1204 3 585 C2H2 Transcription Factor Family AT1G74250 51.347 9.51e-176 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu6g1204 DnaJ 1.2e-21 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1204 K09506 - gmx:100788305 863.218