Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1198 ATGTTTGAGgtgttaattagtttttataattgcatTTCGAGTTATAAGCTGTACAGAGTCATTGACGTTTATTGCTTCCTTCAGGTTACAGCAATGGCTTTCTTTGGTAGAATTGGGAATTTGTTAAGACATGCAGCGAGCAGGCAGGTTAGTTCAGAAATGCGTTCATACCCATCTGTTTTCCAGGCCATACGCAGCATGTCTTCTGCTCCAAGCTCAAAGCTCTTTATAGGAGGTGTTTCATATTCTAGTGATGAGCAGAGCTTGAGGGAAGCTTTTTCAAAATATGGTGAAGTTGTTGATGCAAGGATAATTATGGATCGTGAAACTGGTAGATCCAGAGGATTTGGCTTCATTACATACACTTCAGTTGAGGAGGCATCGAGTGCCATTCAGGCCTTGGACGGTCAGGACCTTCATGGTCGCCGGATTAGGGTAAATTATGCTAATGAAAGAACTCGTGGATATGGCAGTGGTGGCGGCTTTGGTGGTTCATATGGTGCTGGAGCTGGTGCTGGCTACGGAGGTGCTTATGGTGGCTCTGCATATGGTGGTGGCAGCGGCTATGGTGGAAATGTTGATGGTGGTTATGGTGGTGGCAGCTATGGTGGAAATGCTGCTGGCGGTTATGGTGGGGGTGGATATGGTGCAGGCAGCTATGGATCAGGTGGCAATTATGGGGACAGTGGCTCTGGCAATAACTATTCTGCTGCTGACAGTTTTGGAACTAGCAGTGCTGGTGGCAGTTACAGTGGGAGCGGGATGAATCAAGGGAATGATGGAAACACTTACACTGGTGGAAGTACTGGAGGCTATGGAAATTTTGGTGATGCTGGTGGTGTAGGCAATCAAGAAAGCTCTGCTGGTTTTGCCAGTGGTGGATATGATGGAAGTGCCGTCGATGGCAGTGGTGGTACAGGTACTGGCACTAGCTTTGCTGATGGATATGATGGAAGTGGGGGGTTGGAATTTGGCAGCAGTGGCCAATTGGATAGCCGAGCAAGCAGCAATGGAGATGAGGATTTGGGAGATTACAGGGATGACAATGATGATGCTGATAGTTTTGCCAAAAGGGCTTGA 1080 0.4676 MFEVLISFYNCISSYKLYRVIDVYCFLQVTAMAFFGRIGNLLRHAASRQVSSEMRSYPSVFQAIRSMSSAPSSKLFIGGVSYSSDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFITYTSVEEASSAIQALDGQDLHGRRIRVNYANERTRGYGSGGGFGGSYGAGAGAGYGGAYGGSAYGGGSGYGGNVDGGYGGGSYGGNAAGGYGGGGYGAGSYGSGGNYGDSGSGNNYSAADSFGTSSAGGSYSGSGMNQGNDGNTYTGGSTGGYGNFGDAGGVGNQESSAGFASGGYDGSAVDGSGGTGTGTSFADGYDGSGGLEFGSSGQLDSRASSNGDEDLGDYRDDNDDADSFAKRA 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1198 359 SMART rrm1_1 74 147 IPR000504 GO:0003723
Ssu6g1198 359 MobiDBLite consensus disorder prediction 302 359 - -
Ssu6g1198 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 145 IPR000504 GO:0003723
Ssu6g1198 359 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 32 278 - -
Ssu6g1198 359 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 32 278 - -
Ssu6g1198 359 CDD RRM_HP0827_like 74 150 - -
Ssu6g1198 359 Gene3D - 43 168 IPR012677 -
Ssu6g1198 359 SUPERFAMILY RNA-binding domain, RBD 65 164 IPR035979 GO:0003676
Ssu6g1198 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 151 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1198 Ssu-Chr6 19537090 19539935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1198 73 189 Eukaryotic Initiation Factors Gene Family AT3G16380 31.200 9.99e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1198 K12741 - gmx:100782808 220.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1198 6 19537090 19539935 Ssu6g1198 6 19537090 19539935 ECH