Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1195 ATGGCAGCCAAATCAGTCACCCCTGACGCCGTTTCAACACTCCTCGCAAACCCTTCTCCCGATTCTTCGTCGGATCTCCCCGACATCGTCGTCCAAGTCCTCGATCTCAAGCAGAGTGGCAACAGATACATGTTCAGTGCTAGTGATGGAAAAATGAAACTGAGGGCGATTCTTCCTTCGAATATGTACTCTGAGGTGCTCTCCGGGAATATTCAAAACCTTGGTCTTATTCGCATCCTTGATTACACTCTCAACGATATCCCCAATAAGTCAGAGAAATACCTTATTGTGACGAAATGTGAACCGGTGTCTCCAGCGCTTGAAATGGAGATAAAGAGTGAAGAACCTGGGATTCTATTGAAGCCAAAGGAAAAGGGTGGAGTGAAGAGTGAAGGTGCTGCTGGGATTCTTCTGAAGCCAAAGCAGGAAGTGGTGACAAAATCTGCTGCTCAGATTCTACAGGAGCAGCATAGAAATTCGGCTCCTGCTGCACGAATGGCCATGACGCGCAGGGTGCGTCCTCTTGTTTCGTTGAACCCATATCAGGGTAATTGGACGATAAAGGTTAGCGTTACGAGCAAAGGGAACATGCGTACCTATAAGAATGCTAGAGGGGAAGGTTGTGTATTCAATGTTGAATTGACGGACGAGGATgGTACTCAGATCCAGGCAACCATGTTTAATGATGCTGCGAGgaaattttttgacaaatttgttCTGGGAAGGGTTTACTACATTTCAAAGGGGACTTTGAAAGTTGCTAACAAACAGTTCAAAACTGTGCAAAATGATTATGAAATGACGCTAAATGAGATTTCTGAAGTGGAAGAGGTGGCCAGTGAAGCGAGTTTTGTTCCGGAAACAAAATTCAACTTTGTCCAGATTGATCAACTGGGTCCTCATGTCAATAAGTCTGAACTTGTGGATGTTATTGGAGTTGTTAAAAATGTGTCTTCCACAATGAGCATTCGTAGGAAGAGCGACAATGAGAGCATTCCTAAGCGTGACATTACTATTGCTGATGAAACGAAGAAGACAGTAGTTGTATCCTTGTGGAATGATCTAGCAACTAACACAGGACAAGAGTTACTGGACATTGTTGATAAATCTCCGGTTGTTGCAATCAAATCTCTCAGGGTTGGGGACTTCCAAGGTGTTTCTTTGTCAACTATAAGCAGAAGTGTGGTTCTGATAAATCCAGGCATACCCGAAGCAAAGAAACTCAGATGCTGGTATGATTTTGAAGGTAAGGATGCTGCAATGGACTCTGTAGGCTCTGGCTCAAGTCCAACGTCCAACAATGGAATTAGATCCGTGTACTCTGATCGTGTTTCACTTTCTCACATAACCTCAAACCCATCATTGGGAGATGGCAAGCCTGCATTTTTCAGTATTAGAGGATATATAAGCTTCATAAAGCCTGATCAGGCAATGTGGTATCGTGCCTGTAAGACATGCAATAAGAAGGTTACTGAAAGCATTGGTTCTGGATATTGGTGCGAGGGATGCCAGAAAAGCGATGAACAGTGCAGTTTAAGGTATATTATGGTTGCCAGAGTTTGTGATACAAGTGGAGAGGCTTTTGTCTCCGTCTTTAATGAGGAAGCTGAGAAGATCGTTGGATGCTCTGCTGATGATCTAGATAACCTCAAATCACAAGATGGAGAAGATAACCCTTATCAGCTGAAATTGAAACAAGCTACATGGGTTCCACATCTTTTCCGGGTTAGCGTTACTGTGAACGAGTATAATAGCGAGAAGCGGCAAAGGATAACAGCTCGGGCAGTTGTTCCTGTTGACTTCGCTGCTGAGTCAAGGATTATGCTGGAAGATATATCAAAGACGAGAGTATAA 1854 0.4342 MAAKSVTPDAVSTLLANPSPDSSSDLPDIVVQVLDLKQSGNRYMFSASDGKMKLRAILPSNMYSEVLSGNIQNLGLIRILDYTLNDIPNKSEKYLIVTKCEPVSPALEMEIKSEEPGILLKPKEKGGVKSEGAAGILLKPKQEVVTKSAAQILQEQHRNSAPAARMAMTRRVRPLVSLNPYQGNWTIKVSVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNDAARKFFDKFVLGRVYYISKGTLKVANKQFKTVQNDYEMTLNEISEVEEVASEASFVPETKFNFVQIDQLGPHVNKSELVDVIGVVKNVSSTMSIRRKSDNESIPKRDITIADETKKTVVVSLWNDLATNTGQELLDIVDKSPVVAIKSLRVGDFQGVSLSTISRSVVLINPGIPEAKKLRCWYDFEGKDAAMDSVGSGSSPTSNNGIRSVYSDRVSLSHITSNPSLGDGKPAFFSIRGYISFIKPDQAMWYRACKTCNKKVTESIGSGYWCEGCQKSDEQCSLRYIMVARVCDTSGEAFVSVFNEEAEKIVGCSADDLDNLKSQDGEDNPYQLKLKQATWVPHLFRVSVTVNEYNSEKRQRITARAVVPVDFAAESRIMLEDISKTRV 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1195 617 SUPERFAMILY Nucleic acid-binding proteins 441 614 IPR012340 -
Ssu6g1195 617 Gene3D - 5 116 IPR012340 -
Ssu6g1195 617 Gene3D - 171 280 IPR012340 -
Ssu6g1195 617 PANTHER REPLICATION FACTOR A 1, RFA1 6 612 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ssu6g1195 617 SUPERFAMILY Nucleic acid-binding proteins 290 417 IPR012340 -
Ssu6g1195 617 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 5 614 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ssu6g1195 617 SUPERFAMILY Nucleic acid-binding proteins 173 280 IPR012340 -
Ssu6g1195 617 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 6 612 - -
Ssu6g1195 617 Pfam Replication factor-A C terminal domain 462 607 IPR013955 -
Ssu6g1195 617 Pfam Replication protein A OB domain 301 399 IPR031657 -
Ssu6g1195 617 Pfam OB-fold nucleic acid binding domain 185 273 IPR004365 GO:0003676
Ssu6g1195 617 CDD RPA1_DBD_A 174 277 - -
Ssu6g1195 617 Pfam Replication factor-A protein 1, N-terminal domain 6 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Ssu6g1195 617 Gene3D - 426 615 IPR012340 -
Ssu6g1195 617 CDD RPA1_DBD_C 446 614 IPR013955 -
Ssu6g1195 617 CDD RPA1_DBD_B 307 413 - -
Ssu6g1195 617 SUPERFAMILY Nucleic acid-binding proteins 5 109 IPR012340 -
Ssu6g1195 617 Gene3D - 285 425 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1195 Ssu-Chr6 19518534 19521528 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1195 5 616 Core DNA Replication Machinery Family AT5G08020 69.494 0.0 907
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1195 K07466 - gmx:100777091 1046.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1195 6 19518534 19521528 Ssu6g1195 6 19518534 19521528 ECH