Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1183 ATGATGATTGAAAGTTCAAGCAAAGGTCATAAAGCCAATCAACAAGAGGGTGATAGCATTAAAATTGAGAAGTTCTCAAAGGCACCCTCCACCTCAAGACAATGGTCAGCGTTTAGAAATCCAAGAATTGTGCGAGTCTCACGTTCTTTGGGAGGAAAAGATAGGCACAGCAAGGTCTGCACCATTAGGGGACTGAGGGACCGAAGGATTAGACTGTCTGTACCCACAGCAATTCAGTTATATGATCTTCAAGACAGGCTTGGAGTCAACCAACCTAGCAAGGTGGTAGATTGGTTGCTTGAAGCCACCAAATCTGATATTGATAAACTCCCACCACTTCAAATTCCTCACTGTTTTGCTCAATTTCGCCAACAAACCCTACTGCCAGGTACCTCTCAGTTTTCTCTTGGAGCCTTCTATGATGCTAATTCCGCTTTTGTAAAGGATGGGGGGAATCAAAACCTCATGGCAAAGTCAAGGTATTGGGATATAGATTCACTAAACGGTAAGGAGTTAGCTGAAAGTGTGTCAATCTCCCAAAAAGGCAAGTGCTGGATCAAAACAAATGAACAAGGAAATCAAGATGGAATTGGTGGTACTAATGATAGAGAGGATTCTTCAGCTCATAAGCTCTTCCCCGTTGGGACTAAGTCTCATTTACCTGGTTTGTTAAACAATGCCATGACACATAACTCCTACCACCATTCGGAGCCTTCAAGTCTATCTTTATCTCACTTTGGAAGCCATGGATTCTTTCCTTCCCATCCAAGCAGTGGCAGTGGTGTGCAATTTTCATCTTCTAATTTCTCTGGAACATCTGGTCCCCAAATACTTTTTTGCCCACCTTCTGCTACACCATCTGCTTTTTACTCAGTGGAAAGTGATCCAAGACAATCCAACAATGTTCAGATCTTGAGCTCAAGTTCCCAAGTCATGATGCCTCATCCTCTCATTCAATCTCTTCATTCTACCAATTCACCTCTTAGACGCCTTCCAACATCATTTAACTCCAAGCTTGTTGATTCAGATAATAATGGTCGTAGCCAACCAGATAAGGGTAGTGCTCGTTCTTGA 1074 0.4274 MMIESSSKGHKANQQEGDSIKIEKFSKAPSTSRQWSAFRNPRIVRVSRSLGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGVNQPSKVVDWLLEATKSDIDKLPPLQIPHCFAQFRQQTLLPGTSQFSLGAFYDANSAFVKDGGNQNLMAKSRYWDIDSLNGKELAESVSISQKGKCWIKTNEQGNQDGIGGTNDREDSSAHKLFPVGTKSHLPGLLNNAMTHNSYHHSEPSSLSLSHFGSHGFFPSHPSSGSGVQFSSSNFSGTSGPQILFCPPSATPSAFYSVESDPRQSNNVQILSSSSQVMMPHPLIQSLHSTNSPLRRLPTSFNSKLVDSDNNGRSQPDKGSARS 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1183 357 MobiDBLite consensus disorder prediction 1 27 - -
Ssu6g1183 357 ProSiteProfiles TCP domain profile. 52 110 IPR017887 -
Ssu6g1183 357 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 2 352 IPR005333 GO:0003700
Ssu6g1183 357 MobiDBLite consensus disorder prediction 322 357 - -
Ssu6g1183 357 Pfam TCP family transcription factor 52 121 IPR017887 -
Ssu6g1183 357 PANTHER TCP FAMILY TRANSCRIPTION FACTOR 2 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1183 Ssu-Chr6 19383562 19384635 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1183 36 198 TCP Transcription Factor Family AT5G60970 56.140 3.13e-51 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Ssu6g1183 TCP 2.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1183 - - pvu:PHAVU_003G183700g 533.872