Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1182 ATGGAACTAAACTTATGCAACTTGGTGAGTTTGTTGCAGGATATGAGGGGTGTGagtgaaaaacaaagaatttcAATAGAATCATCAAGAACCTCATTCTCTTCTTCTTGTTCATCATCAATGTCCTCTTTGGACTATAAAGCTCAAGCAGATGCTCCCTTTGACCGGATTGTTTTTCCTGAAACTCCTATGAGGGACCCAGTTATGAACCAAACAAATACCTCTCCCCATTTAGTAAGTCACTCCCTTGACCTGAGGGATGTGGTGAAGGACTCTATGTATAGGGAGGCCAGAGGACTATCCAAAGAAAGGGATTCCCCAAGACATTTTCAGCTGTCCAAATCTGTTGATGGAAAACAAAGCATGCGTATTGATCTAAAGGAGTCCCTGCAAGTCCTTGCTAAACTTAGAGAAGCACCTCGGCATTATGTTGAAGCTAAAGAACTTCCAAGATTATCATATGAAGTAAAAGATAGACATTGGCATTCCATCTCAAAGGATGCTCCTCGGTTTTCTTATGATGGAAGAGACACAACTGGTATGTCTTTTGAATCACATGATACCATCAAATGCTCACCAAAGCTAAAAGAGCTTCCTAGACTTTCACTGGACAGTAAGGAAGGTTCATGGCGCACACACAGCTCTGATTCAAAACCCAGTAATCTCTCAAGAAATTTCAATACAGGTGGTGCCTCCACCTCAGTTGACAAAGTTTCTAGTCTACAACAGCCGTCAGCATCCCAGAGCCGGCCACCTAGTGTTGTAGCAAAATTAATGGGCTTGGAAGCATTGCCAGAATCCTATATGGCCAGTGATACTAAGTCAAATTTGAGTGAAACTGGCTCAACTCAAGGTAATGATCAGTTTTCGAAAAATGGACTCATCAGGCCACTTCTACTTTCTAATTCACCTAAAATCTCATTGAAAGACTCGACTTCCCCACGGTCGAAGAATCCTGATTTGGTTGTAAAACCAATCTTAAGTTCAAGGTTTCCCATTGAACCAGCACCATGGAAGCAGCAGGGTGGAAACCAAAGCTCTGAGAAACTAACTTCCAGGGCCATAAAAGCTACGGCAAGAACACCAGATTCATTTCCTTCAGTCTATAGTGAGATTGAGAAGAGATTGAAGGATCTTGAATTTAAACAATCAGGAAGGGATCTCAGAGCACTCAAACGGATACTGGAAGCAATGCAAGTAAAGGGGCTGTTAGAGACCAGAAAAGAAGAGCAGGCTTCAATTGTTGTTGGAAATAAAAGAGACTATGAACTAAAACCTAGCCTTATTCAGCATTCTATGTCAGTAAGGCAACAAGCAGCCAGGGGATCTGACTCTGCAAGGGCTTTAGAATTACCAATTGTGATCATGAAACCGGCAAAACTTATTGAGAAAACTGGAATATCTGATTCCTCAGTCTTTCCAATGGGTGGACTTTCTGATTCCCATAAACTTCAGAGTGGTGGTTTGCATGCACATGATAAAAAGGGGACAGCTTCCGGTCAAATAGCAAAAGATCAGTCTCTTAGAAACAGTCACAGGGATGATTCTACCAgttttaatgaaaagaaagcaAATAGTATCAAGACTATAAAATCAGCACAATCTCAACCAAGGTCTAAACAATTTCCAAAAGAAAATAGTCCAAGTTCAGTGAAGAATTCAGAATCTGTTGGCCCAAGAATGCAACAGAAGAAGTTAGAGGCAGAGAAGCAATCTCGCCTGCCTACCCCACCATCAGATTCAAATAAGCCCAGAAGGCAGTCCTGTAAGCTGACAACAGAATCAGGTTCTCCCAGTCGAAAATTGAGACCTAAAATCCCTAATTCACAGTTCAGTGATGATCAACTTAGTGAGACTAGCAATGAATTTAGTAGTTTAAGTTACCAGTGGGATGAAATATCTCTGCGATCAGATAGTATCACTGTTGACTCAAAGATGGATATTGAAGTCACTAGCAGTTTACAATCTGCTGAAATTATTGATAGCCAAAGCCCATCTTTGAAGGCTATTGAGCATTTGGTTTCAGGATCGGTGCAGAAGAAATCAACTCTGAGGTGGGATGATGATAAGTCAATCGCAGAACTTGCAACAGATGCCCCAGATCATCAAAGTCTTGATTCAGTTCTTGATGTCTcagtatataaatatgatatgcCATCCCCAGTAAAGCGTATATCCAATGCTCCTAAAGCTGGTGATGCTCAATTATctaaagaaaatgagaatacCGATCACTGGAACCCTGCAGATGACCTCTTCGTTAACAACACAAGATATACAGAGATCAACCGCAAGAAATTGCAAAGCATAGATCGCCTTATTCAAAAGCTTAGACAGCTAAACTCAAGTCATGATGAAACTAGAAACGATTACATAGCTTCCCTTTGTGACAATACAAATCCAGACCACAGATACATCGCTGAAATACTATTAGCTTCAGGTCTACTACTGAGAGCTATGAGTTCTGAGTTGCTGACATTTCAACACCACTCATCAGGTCATCCCATTAACCCTGAGTTATTCCGTGTGTTGGAGCAGACCAAGATAAGTAGTTTGCTTTCAAAACAAGAAATCAGCATTGGAAAAGTTGCTTACATGAAGCTAAATACAGAGAAGTTGCACAGGAAACTCATCTTTGATGCTGTGAATGAGATTCTTGGTTCAAAATTAGGCTCTTCTCTTGAGCCATGGTTGAAGCCTAATGGACTCACAACGATATTCGTCAGTGCACAAAAGCTTCTTAAAGAACTCTGCTTTGAGATACAAAAACTTCAATCTGTGAAGCCAGAATGTTGTTTAGAAGATGAAGGGGATGGACTGAAAAGTATGCTATGCGAAGATGTGATGCGTCACTCAGAAAGCTGGACAGGTTTCCCTGGTGAATTACCTGGGGTTGTGTTGGATGTTGAGAGACAGATATTTAAGGACTTATTTGATGAGTTTGTGATTGATGAAGTGGCTAGTTTGCGAGTGAAGTCCGGTCGGTAG 2988 0.4029 MELNLCNLVSLLQDMRGVSEKQRISIESSRTSFSSSCSSSMSSLDYKAQADAPFDRIVFPETPMRDPVMNQTNTSPHLVSHSLDLRDVVKDSMYREARGLSKERDSPRHFQLSKSVDGKQSMRIDLKESLQVLAKLREAPRHYVEAKELPRLSYEVKDRHWHSISKDAPRFSYDGRDTTGMSFESHDTIKCSPKLKELPRLSLDSKEGSWRTHSSDSKPSNLSRNFNTGGASTSVDKVSSLQQPSASQSRPPSVVAKLMGLEALPESYMASDTKSNLSETGSTQGNDQFSKNGLIRPLLLSNSPKISLKDSTSPRSKNPDLVVKPILSSRFPIEPAPWKQQGGNQSSEKLTSRAIKATARTPDSFPSVYSEIEKRLKDLEFKQSGRDLRALKRILEAMQVKGLLETRKEEQASIVVGNKRDYELKPSLIQHSMSVRQQAARGSDSARALELPIVIMKPAKLIEKTGISDSSVFPMGGLSDSHKLQSGGLHAHDKKGTASGQIAKDQSLRNSHRDDSTSFNEKKANSIKTIKSAQSQPRSKQFPKENSPSSVKNSESVGPRMQQKKLEAEKQSRLPTPPSDSNKPRRQSCKLTTESGSPSRKLRPKIPNSQFSDDQLSETSNEFSSLSYQWDEISLRSDSITVDSKMDIEVTSSLQSAEIIDSQSPSLKAIEHLVSGSVQKKSTLRWDDDKSIAELATDAPDHQSLDSVLDVSVYKYDMPSPVKRISNAPKAGDAQLSKENENTDHWNPADDLFVNNTRYTEINRKKLQSIDRLIQKLRQLNSSHDETRNDYIASLCDNTNPDHRYIAEILLASGLLLRAMSSELLTFQHHSSGHPINPELFRVLEQTKISSLLSKQEISIGKVAYMKLNTEKLHRKLIFDAVNEILGSKLGSSLEPWLKPNGLTTIFVSAQKLLKELCFEIQKLQSVKPECCLEDEGDGLKSMLCEDVMRHSESWTGFPGELPGVVLDVERQIFKDLFDEFVIDEVASLRVKSGR 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1182 995 Pfam DUF761-associated sequence motif 245 268 IPR032795 -
Ssu6g1182 995 MobiDBLite consensus disorder prediction 269 290 - -
Ssu6g1182 995 MobiDBLite consensus disorder prediction 522 560 - -
Ssu6g1182 995 MobiDBLite consensus disorder prediction 507 521 - -
Ssu6g1182 995 PANTHER LONGIFOLIA PROTEIN 16 993 IPR033334 GO:0051513
Ssu6g1182 995 MobiDBLite consensus disorder prediction 483 618 - -
Ssu6g1182 995 MobiDBLite consensus disorder prediction 202 254 - -
Ssu6g1182 995 Coils Coil 770 790 - -
Ssu6g1182 995 MobiDBLite consensus disorder prediction 214 252 - -
Ssu6g1182 995 PANTHER LONGIFOLIA PROTEIN 16 993 - -
Ssu6g1182 995 MobiDBLite consensus disorder prediction 574 618 - -
Ssu6g1182 995 Pfam Domain of unknown function (DUF4378) 802 980 IPR025486 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1182 Ssu-Chr6 19367861 19371581 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1182 69 995 TRM (TON1 Recruiting Motif) Superfamily AT1G74160 44.877 0.0 586
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1182 - - gmx:100775311 1533.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1182 6 19367861 19371581 Ssu6g1182 6 19367861 19371581 ECH