Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1177 ATGGCCAATGCACAtgaatttgtatcaaaattcccAGAAAAATACCAGACCTTTGTTGGAGAGCGTGGGGTAAGGCTTTCAGGAGGGCAGAAACAGAGAATAGCAATCGCTAGAGCCCTGCTTATGGACCCAAAAATTCTCCTCTTGGATGAAGCCACCAGTGCCCTAGATGCTGAAAGCGAATACCTGGTGCAGGATGCCATGGAGTCTCTCATGAAAGGAAGAACAGTTCTAGTCATTGCTCATAGGTTATCAACTGTTAAAACTGCTGATACTGTTGCAGTTATATCTGATGGCCAAGTAGTTGAGAGTGGCACCCATGAAGAGCTTCTCAGCAAGAACGGTGTCTACACTGCATTAGTCAAGAGACAACTGCAAACAACAAAAGCCGAAATCTAG 399 0.4336 MANAHEFVSKFPEKYQTFVGERGVRLSGGQKQRIAIARALLMDPKILLLDEATSALDAESEYLVQDAMESLMKGRTVLVIAHRLSTVKTADTVAVISDGQVVESGTHEELLSKNGVYTALVKRQLQTTKAEI 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1177 132 PANTHER ABC TRANSPORTER B FAMILY MEMBER 25 1 128 - -
Ssu6g1177 132 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 124 IPR027417 -
Ssu6g1177 132 Gene3D - 1 128 IPR027417 -
Ssu6g1177 132 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 1 128 IPR039421 -
Ssu6g1177 132 Pfam ABC transporter 4 54 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1177 Ssu-Chr6 19261601 19262106 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1177 1 124 Calmodulin-binding Proteins AT2G36910 65.079 2.36e-49 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1177 - - gmx:100810510 247.284