Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1176 ATGAACGGCTTAAGAAGTGAACGAGCCCCTCTCTTGGAGACTGAGCGCGGTGGAAGAGGAAAGACGGATGGTGCCTCGGAAGGTCAAGCCTCAGACCTTGAACATGGTGATGCAGTGCCGGCGGCAAATGTGGGATTCTGTCGAGTGCTTTCACTTGCAAAACCTGAGGCTGGAAAGTTGGTGATTGGTACAGTGGCTCTGTTGATTGCTGCCACATCAAGTATCTTAGTTCAAAAATTTGGTGGGAAGATAATTGACATTGTCTCAAGGGATCTCCGAACTCCAGAGGAGAAAGATGAAGCTTTGAATGCTGTTAAGAACACCATACTAGAAATCTTTCTGATCGTTGTCTTTGGTTCAATTTGCACTGCACTTCGAGCTTGGCTTTTTTATACTGCTAGTGAAAGGGTTGTTGCACGGCTGAGACAGAATTTGTTCAGTCACCTTGTAACCCAGGAGATAGCCTTCTTTGATGTTACTCGAACCGGCGAACTTTTAAGTAGGCTATCTGAAGATACACAGATCATAAAGAATGCTGCAACTACCAATCTTTCTGAGGCCCTGAGAAACTTTTCAACTGCATTTATTGGTCTGAGCTTCATGTTTGCAACATCATGGAAGTTAACATTGTTGGCTTTGGCTGTTGTACCTGTTCTTTCTGTTGCTGTTCGCAAGTTTGGCCGTTACCTGCGTGAACTTTCTCATAAAACTCAAGCTGCAGCTGCAGTAGCTTCATCGATTGCTGAGGAATCCTTTGGTGCAATAAGAACAGTAAGATCATTTGCCCAAGAAGATTATGAAATAACACGCTACTCAGAGAAAGTTGATGAAACACTTAATCTTGGTCTTAAGCAAGCTAAAGTTGTGGGACTCTTTTCTGGAGGCCTTAATGCAGCATCTACACTTTCAGTTATTGTAGTTGTTATATATGGAGCTAGTTTGACAATCAAGGGTTCCATGTCCTCGGGTGATCTTACATCTTTCATTCTTTATAGTCTCTCAGTGGGGTCTTCTATATCTGGTCTGTCAGGATTGTATACAGTAGTTATGAAAGCTGCAGGTGCTAGCAGAAGGGTATTTCAACTTTTGGATCGTACCTCATCCATGCCTAAGTCGGGAAATAAATGTCCACTGGGTGATCAAGATGGGGAAGTAGAACTAGATGATGTGTGGTTTTCCTATCCATCACGCCCTAATCATCCGGTTCTCAAGGGCATTACATTGAAACTGCATCCAGGATCAAAGGTTGCCCTTGTTGGTCCAAGTGGTGGTGGAAAGAGTACAATTGCAAACTTAATTGAAAGATTTTATGACCCAACCAAGGGAAAGATTCTGCTGAATGGGGTTCCTTTGGTAGAAATATCACACAAGCATTTACACAGAAAGATCAGTATAGTGAGTCAGGAGCCTACACTCTTCAACTGTTCCATAGAGGAGAACATAGCTTATGGATTTGATGGCAAAGTGAACGCTGTTGATATAGAAAATGCTGCTGTAATATTTACTGTCTTCATTCTCTAA 1521 0.426 MNGLRSERAPLLETERGGRGKTDGASEGQASDLEHGDAVPAANVGFCRVLSLAKPEAGKLVIGTVALLIAATSSILVQKFGGKIIDIVSRDLRTPEEKDEALNAVKNTILEIFLIVVFGSICTALRAWLFYTASERVVARLRQNLFSHLVTQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNFSTAFIGLSFMFATSWKLTLLALAVVPVLSVAVRKFGRYLRELSHKTQAAAAVASSIAEESFGAIRTVRSFAQEDYEITRYSEKVDETLNLGLKQAKVVGLFSGGLNAASTLSVIVVVIYGASLTIKGSMSSGDLTSFILYSLSVGSSISGLSGLYTVVMKAAGASRRVFQLLDRTSSMPKSGNKCPLGDQDGEVELDDVWFSYPSRPNHPVLKGITLKLHPGSKVALVGPSGGGKSTIANLIERFYDPTKGKILLNGVPLVEISHKHLHRKISIVSQEPTLFNCSIEENIAYGFDGKVNAVDIENAAVIFTVFIL 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1176 506 Gene3D ABC transporter type 1, transmembrane domain 45 374 IPR036640 GO:0005524|GO:0016021
Ssu6g1176 506 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 3 499 IPR039421 -
Ssu6g1176 506 Gene3D - 379 501 IPR027417 -
Ssu6g1176 506 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 61 351 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu6g1176 506 MobiDBLite consensus disorder prediction 1 32 - -
Ssu6g1176 506 CDD ABC_6TM_AtABCB27_like 63 359 - -
Ssu6g1176 506 SUPERFAMILY ABC transporter transmembrane region 48 364 IPR036640 GO:0005524|GO:0016021
Ssu6g1176 506 Pfam ABC transporter transmembrane region 60 333 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu6g1176 506 Pfam ABC transporter 403 489 IPR003439 GO:0005524
Ssu6g1176 506 PANTHER ABC TRANSPORTER B FAMILY MEMBER 25 3 499 - -
Ssu6g1176 506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 499 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1176 Ssu-Chr6 19254298 19261539 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1176 113 500 Calmodulin-binding Proteins AT2G36910 31.218 1.38e-46 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1176 - - gmx:100810510 896.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1176 6 19254298 19261539 Ssu6g1176 6 19254298 19261539 ECH