Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1174 ATGCAGATTCAAGGGCATTCCcattttttactaaaacaaaAAGAAGCCTATGATGCACTTGATCCAACTGGTAATATTACAATCAAATGGGATATCATAAGCTGGACTCCAGACGGCTACATTGCTGTTGTTTCAATGTACAACTTTCAACAGTATCGCCATATTCAGGCTCCTGGATGGATACTAGGGTGGACATGGGCAAAAAAGGAAGTAATTTGGAATGTAATGGGAGGCCAAACCACAGAGCAAGGGGACTGTTCAAGGTTCAAAGGGAATACCCCACATTGTTGTAAGAAGGACCCAACAGTAGTGGATTTACTGCCTGGAACTCCTTACAACCAGCAGATTGCAAATTGTTGCACAGGGGGAGTCTTAAGCTCATGGGCCCAGGACCCTGAAAATGCAATAAGTTCATTTCAACTTAGTGTTGGTTCAGCAGGAACAACTAACAAAACGGTCAAACTTCCAAAAAATTTTACCCTGAAAGCACCAGGACCTGGTTATACTTGTGGCCCTGCGAAGATTGGGAAACCAACTAAATTTATTACCAAAGACAAGAGGAGAACCACTCAGGCCTTGATGACCTGGAATGTTACCTGCACGTATTCTCAATTCCTGGCTCAGAAGACCCCAACTTGCTGTGTTTCTCTCTCATCCTTCTATAACAGTACAATAGTAAACTGCCCTACCTGCACCTGTGGTtgccaaaacaaaacagaaccTAGCAGCTGTGTAGATCCTGATTCCCCGCATTTAGCTTCGGTTGTGTCACCACCTGGCAAAGCTATAAATACACCTCTGGTCCGGTGCACCAACCACATGTGTCCTATTCGAGTGCATTGGCACGTGAAGCTTCAATATAAAGAGTACTGGAGGGTCAAGATCACCATCACAAATTTCAATTACAGAATGAACTATTCACAATGGAACCTTGTTGTGCAGCACCCAAACTTTGATAATGTAACTCAGGTTTTCAGCTTTAATTACAAGCCACTAACACCTTATGTGGGCTTAAATGATACTGGTATGCTGTGGGGAGTCAAGTTCTATAATGATTTACTTACTTCAGCCGGACCCCTTGGGAATGTGCAGTCTGAGCTCTTATTCCGAAAGGACAAATCAACCTTTACATTTGATAAGGGATGGGCTTTCCCACGAAGAATTTACTTCAATGGAGATAACTGTGTAATGCCACCTCCGGATGCCTACCCATGGCTGCCAAATGCAAGTTCAAAACTAGTTTTCTCTTTACTAAGTACAGTCCTAGGCACTTTAGCTTGTGTGGTAATCTTATTGACTTAA 1302 0.4201 MQIQGHSHFLLKQKEAYDALDPTGNITIKWDIISWTPDGYIAVVSMYNFQQYRHIQAPGWILGWTWAKKEVIWNVMGGQTTEQGDCSRFKGNTPHCCKKDPTVVDLLPGTPYNQQIANCCTGGVLSSWAQDPENAISSFQLSVGSAGTTNKTVKLPKNFTLKAPGPGYTCGPAKIGKPTKFITKDKRRTTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNSTIVNCPTCTCGCQNKTEPSSCVDPDSPHLASVVSPPGKAINTPLVRCTNHMCPIRVHWHVKLQYKEYWRVKITITNFNYRMNYSQWNLVVQHPNFDNVTQVFSFNYKPLTPYVGLNDTGMLWGVKFYNDLLTSAGPLGNVQSELLFRKDKSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWLPNASSKLVFSLLSTVLGTLACVVILLT 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1174 433 PANTHER PROTEIN COBRA 11 431 IPR006918 GO:0010215|GO:0031225
Ssu6g1174 433 PANTHER COBRA-LIKE PROTEIN 11 431 - -
Ssu6g1174 433 PIRSF COBRA 3 433 IPR006918 GO:0010215|GO:0031225
Ssu6g1174 433 Pfam COBRA-like protein 40 203 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1174 Ssu-Chr6 19183601 19186773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1174 11 430 COBRA Gene Family AT3G02210 75.534 0.0 695
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1174 - - gmx:100811581 875.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1174 6 19183601 19186773 Ssu6g1174 6 19183601 19186773 ECH