Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1173 ATGGAATCTTGGAGCTATGTCCCTGAAGAAAAGGAGTGTGCCTCCAGTGAGGCGCTCTCTTCTCCCAACACTCTCGGGAGGAGCAAAAACTCTTTCTTGGGGTGGGAACTGAAAACCCCATGTGGGTTTTCCAACGACATGTTGGGTTTGGGTCAGCACAGCATTGAGAATCAAGGTTTTGAGGAATTGGGTTTTCCCGAAATGTTGGGGAAACAGTTGTCCGATGGTCTAAGTGGCAGTGTTCCAAGCAGAAAGGTGGATGGTAAACAACAACACAGTGACAGAATCACTGGCACTGTTGTGGATGCCCCAAGCGGGTTTTCCCAAAGAGGGGACTCAAATTCCAAGGACTCACTCATTGATTTGAAGCTGGGCCGATTTGGTGACCGTGGAGATGCCATTGATCCGGCGTTTTCCAAGGTTTTGTCTTCTTCTGAGTCATCAACGCCTCCCAAGAGAGTGAGAGCTTCTGGGGTGCACTCTCAGACTGCATACTGTCAAGTCTATGGCTGTAACAAAGATCTCAGCTCATGTAAGGACTACCACAAGAGGCACAAGGTGTGTGAGGTTCACTCCAAGACTGCCAAAGTTATAGTCAATGGCATTGAGCAAAGGTTTTGCCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGAAGCTGCCGTAAACGCCTTGCAGGCCATAATGAGCGTAGAAGAAAACCACAAATGGGTATTAACTCCGGAAAGTCTGGGAGGTTGCTTCAGCCATGTGGTGATAGCAGATTCCAGGGAACCATGCTAACATCAGCATCTTTTATCTGCCCAGAGATGCTCCCTAGTGGCGTCATGCATTCTGAGCAATATGGTGTGAGTGGCTTCTGGCGACCTATCAAAGCTGAACACGGGGATGGTTTTAGGCATCTGTCTTCTATGCCTGTAACCAATGGACATCCTCAGTCAAAATCTTTATTTCCATCAtataatgaaaaacaatttccttttcttcatGAAAATGGTCCTACATCCACCACAGGAAGCATCTTTTGTGAGAGCAATAGCCACTATCCACCTGCCCCTGGGGCCCAAAATTCTGGGTTAAGACCACTATTCCAGGACACCATAGGAAATGAGGACTTCAATGTTTTTGATACAGCATCAACCGTTCAAGGATTATCGGGGATTTCAGACTCCTGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCAAGCCAATCATCAGGAATTCCCTTGGCTCAGTCCTTGGTTATTCCAAGCAGTCATAACCATCACTACAACATGAGTCAGGTCTCTGAAAAGATAGGAATAAGCTCACAGACTTCTTCAAGCCGAGTGTCAGATAGTTTTCCATCAGAACTAAATCATGCAGATGGAAGTCATCTCAGTCCTGTATTAATATCAGACAATAATGATGTTGTAAACTTTGATATCACAGATGGTTTCTTCCAAGGTTCAGATTTCGATAATGTGAAAGATCGTCTTTCCTGCGAAGGTGGTGCAACCATTAACTTGTTACAATTGTCATCGCAGCTTCAGCGCGTTGAGCATGAGAGGCAATCCTTGCAGGTGAAGCAAGAGAATGATTCTTCTTGCACTCTGCGGATTACATAA 1635 0.4508 MESWSYVPEEKECASSEALSSPNTLGRSKNSFLGWELKTPCGFSNDMLGLGQHSIENQGFEELGFPEMLGKQLSDGLSGSVPSRKVDGKQQHSDRITGTVVDAPSGFSQRGDSNSKDSLIDLKLGRFGDRGDAIDPAFSKVLSSSESSTPPKRVRASGVHSQTAYCQVYGCNKDLSSCKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQMGINSGKSGRLLQPCGDSRFQGTMLTSASFICPEMLPSGVMHSEQYGVSGFWRPIKAEHGDGFRHLSSMPVTNGHPQSKSLFPSYNEKQFPFLHENGPTSTTGSIFCESNSHYPPAPGAQNSGLRPLFQDTIGNEDFNVFDTASTVQGLSGISDSCCALSLLSSQSQNSSSQSSGIPLAQSLVIPSSHNHHYNMSQVSEKIGISSQTSSSRVSDSFPSELNHADGSHLSPVLISDNNDVVNFDITDGFFQGSDFDNVKDRLSCEGGATINLLQLSSQLQRVEHERQSLQVKQENDSSCTLRIT 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1173 544 MobiDBLite consensus disorder prediction 1 24 - -
Ssu6g1173 544 Pfam SBP domain 166 239 IPR004333 GO:0003677
Ssu6g1173 544 ProSiteProfiles Zinc finger SBP-type profile. 163 240 IPR004333 GO:0003677
Ssu6g1173 544 Coils Coil 512 532 - -
Ssu6g1173 544 MobiDBLite consensus disorder prediction 230 249 - -
Ssu6g1173 544 Gene3D - 156 227 IPR036893 GO:0003677|GO:0005634
Ssu6g1173 544 SUPERFAMILY SBT domain 164 243 IPR036893 GO:0003677|GO:0005634
Ssu6g1173 544 MobiDBLite consensus disorder prediction 74 114 - -
Ssu6g1173 544 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 42 544 IPR044817 GO:0003677
Ssu6g1173 544 MobiDBLite consensus disorder prediction 93 114 - -
Ssu6g1173 544 PANTHER 1 PROTEIN, PUTATIVE-RELATED 42 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1173 Ssu-Chr6 19169886 19173207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1173 120 283 SBP-box Gene Family AT1G69170 55.488 1.49e-52 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Ssu6g1173 SBP 7.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1173 - - gmx:100817547 923.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2010 1 57040396 57045181 Ssu6g1173 6 19169886 19173207 ECH
Ssu6g1173 6 19169886 19173207 Ssu6g1173 6 19169886 19173207 ECH