LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu6g1172	atGGGAAGGGGGAGGGTTGAACTGAAGAGGATAGAGAACAAAATTAACAGGCAAGTCACGTTTGCCAAGAGAAGAAATGGGTTGCTCAAGAAGGCCTATGAACTCTCAGTCCTTTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGTGGCAAGCTTTATGAGTTCAGCAGCACCTCAAgTATGATGAAAACACTGGAGAAGTACCAGAAGCACAGTTACAGTGCACTGGAGACCACCCGACCAATTAACGACACTCAGAACTATCAGGAATATTTGAGATTAAAAGCAAGGGTAGAAGTCTTGCAACGTTCGCaaagGAACCTACTCGGGGAAGATCTTGCCCAAATGAATACAACTGAGCTCGAGCAGCTTGAGAATCAACTGGAGGCAGCACTGAGCAATATTAGGTCAACAAAGACTCAATTCATGCTTGACCAGCTTGCTGATCTTCACCACCGGGAAACAATGCTTGTTGAAACTAATAATGTGTTAAGGAGTAAGTTGGAAGAAACTAACAACTCACAAGTTCCAGTAAGTCTGGCTTTGGAAGCTGGAGGGCCTAACATCCATTACACCAACTTTCCACCTCAATCAGAGGGGTTCTTCCAGCCAGTGGGAGTGAATCCAAATTGGCAAATTGGATACAACCCTGGTCCTGGTGATGCAAACGTTGGAGCTTCATCCTTAAGTATGCATGGATTCGCCTCTGGGTGGATGCTTTGA	729	0.454	MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSSMMKTLEKYQKHSYSALETTRPINDTQNYQEYLRLKARVEVLQRSQRNLLGEDLAQMNTTELEQLENQLEAALSNIRSTKTQFMLDQLADLHHRETMLVETNNVLRSKLEETNNSQVPVSLALEAGGPNIHYTNFPPQSEGFFQPVGVNPNWQIGYNPGPGDANVGASSLSMHGFASGWML	242

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu6g1172	242	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Ssu6g1172	242	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Ssu6g1172	242	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Ssu6g1172	242	CDD	MADS_MEF2_like	2	78	IPR033896	GO:0000977\|GO:0045944
	Ssu6g1172	242	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Ssu6g1172	242	PANTHER	DEVELOPMENTAL PROTEIN SEPALLATA 1	1	224	-	-
	Ssu6g1172	242	ProSiteProfiles	K-box domain profile.	86	176	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Ssu6g1172	242	Gene3D	-	13	83	IPR036879	GO:0003677\|GO:0046983
	Ssu6g1172	242	Pfam	K-box region	86	170	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Ssu6g1172	242	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	1	224	-	-
	Ssu6g1172	242	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Ssu6g1172	242	SUPERFAMILY	SRF-like	2	80	IPR036879	GO:0003677\|GO:0046983
	Ssu6g1172	242	Coils	Coil	116	143	-	-
	Ssu6g1172	242	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Ssu6g1172	242	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu6g1172	Ssu-Chr6	19109122	19117286	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu6g1172	1	242	MADS-box Gene Family	AT5G15800	54.580	2.79e-89	263

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Ssu6g1172		K-box	1.7e-26	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu6g1172	K09264		-	gmx:100797819	429.483

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu1g2008	1	56837780	56847445	Ssu6g1172	6	19109122	19117286	ECH
	Ssu3g0321	3	5907535	5914151	Ssu6g1172	6	19109122	19117286	ECH
	Ssu8g2183	8	57567296	57572641	Ssu6g1172	6	19109122	19117286	ECH
	Ssu6g1172	6	19109122	19117286	Ssu6g1172	6	19109122	19117286	ECH